> top > docs > PMC:1186732 > spans > 21538-23182 > annotations

PMC:1186732 / 21538-23182 JSONTXT

Annnotations TAB JSON ListView MergeView

craft-sa-dev

Id Subject Object Predicate Lexical cue
T4277 0-1 NN denotes M
T4278 2-7 NN denotes Opsin
T4279 1-2 HYPH denotes -
T4280 40-43 VBP denotes Are
T4281 8-11 CC denotes and
T4282 12-19 NN denotes Thyroid
T4283 37-39 NN denotes β2
T4284 20-27 NN denotes Hormone
T4285 28-36 NN denotes Receptor
T4286 44-53 JJ denotes Unchanged
T4287 54-56 IN denotes in
T4288 57-60 DT denotes the
T4289 65-71 NN denotes Mutant
T4290 61-64 NN denotes rd7
T4291 71-275 sentence denotes Only two cone-specific genes failed to show any change in expression by either microarray or in situ hybridization in the rd7 mutant: M-opsin (Opn1mw) and thyroid hormone receptor β2 (Thrb2) (Figure S8).
T4292 72-76 RB denotes Only
T4293 95-100 NNS denotes genes
T4294 77-80 CD denotes two
T4295 81-85 NN denotes cone
T4296 86-94 JJ denotes specific
T4297 85-86 HYPH denotes -
T4298 101-107 VBD denotes failed
T4299 108-110 TO denotes to
T4300 111-115 VB denotes show
T4301 116-119 DT denotes any
T4302 120-126 NN denotes change
T4303 127-129 IN denotes in
T4304 130-140 NN denotes expression
T4305 141-143 IN denotes by
T4306 144-150 CC denotes either
T4307 151-161 NN denotes microarray
T4308 162-164 CC denotes or
T4309 165-167 FW denotes in
T4310 168-172 FW denotes situ
T4311 173-186 NN denotes hybridization
T4312 187-189 IN denotes in
T4313 190-193 DT denotes the
T4314 198-204 NN denotes mutant
T4315 194-197 NN denotes rd7
T4316 204-206 : denotes :
T4317 206-207 NN denotes M
T4318 208-213 NN denotes opsin
T4319 207-208 HYPH denotes -
T4320 214-215 -LRB- denotes (
T4321 215-221 NN denotes Opn1mw
T4322 221-222 -RRB- denotes )
T4323 223-226 CC denotes and
T4324 227-234 NN denotes thyroid
T4325 252-254 NN denotes β2
T4326 235-242 NN denotes hormone
T4327 243-251 NN denotes receptor
T4328 255-256 -LRB- denotes (
T4329 256-261 NN denotes Thrb2
T4330 261-262 -RRB- denotes )
T4331 263-264 -LRB- denotes (
T4332 271-273 NN denotes S8
T4333 264-270 NN denotes Figure
T4334 273-274 -RRB- denotes )
T4335 274-275 . denotes .
T4336 275-384 sentence denotes This result is particularly notable because Thrb2 is absolutely required for the expression of M-opsin [22].
T4337 276-280 DT denotes This
T4338 281-287 NN denotes result
T4339 288-290 VBZ denotes is
T4340 291-303 RB denotes particularly
T4341 304-311 JJ denotes notable
T4342 312-319 IN denotes because
T4343 340-348 VBN denotes required
T4344 320-325 NN denotes Thrb2
T4345 326-328 VBZ denotes is
T4346 329-339 RB denotes absolutely
T4347 349-352 IN denotes for
T4348 353-356 DT denotes the
T4349 357-367 NN denotes expression
T4350 368-370 IN denotes of
T4351 371-372 NN denotes M
T4352 373-378 NN denotes opsin
T4353 372-373 HYPH denotes -
T4354 379-380 -LRB- denotes [
T4355 380-382 CD denotes 22
T4356 382-383 -RRB- denotes ]
T4357 383-384 . denotes .
T4358 384-589 sentence denotes Furthermore, the repression of S-opsin expression in the dorsal third of the mouse retina is thought to depend, at least in part, on Thrb2 since S-opsin shows dorsal derepression in the Thrb2 mutant [22].
T4359 385-396 RB denotes Furthermore
T4360 478-485 VBN denotes thought
T4361 396-398 , denotes ,
T4362 398-401 DT denotes the
T4363 402-412 NN denotes repression
T4364 413-415 IN denotes of
T4365 416-417 NN denotes S
T4366 418-423 NN denotes opsin
T4367 417-418 HYPH denotes -
T4368 424-434 NN denotes expression
T4369 435-437 IN denotes in
T4370 438-441 DT denotes the
T4371 449-454 NN denotes third
T4372 442-448 JJ denotes dorsal
T4373 455-457 IN denotes of
T4374 458-461 DT denotes the
T4375 468-474 NN denotes retina
T4376 462-467 NN denotes mouse
T4377 475-477 VBZ denotes is
T4378 486-488 TO denotes to
T4379 489-495 VB denotes depend
T4380 495-497 , denotes ,
T4381 497-499 RB denotes at
T4382 500-505 RBS denotes least
T4383 506-508 IN denotes in
T4384 509-513 JJ denotes part
T4385 513-515 , denotes ,
T4386 515-517 IN denotes on
T4387 518-523 NN denotes Thrb2
T4388 524-529 IN denotes since
T4389 538-543 VBZ denotes shows
T4390 530-531 NN denotes S
T4391 532-537 NN denotes opsin
T4392 531-532 HYPH denotes -
T4393 544-550 JJ denotes dorsal
T4394 551-563 NN denotes derepression
T4395 564-566 IN denotes in
T4396 567-570 DT denotes the
T4397 577-583 NN denotes mutant
T4398 571-576 NN denotes Thrb2
T4399 584-585 -LRB- denotes [
T4400 585-587 CD denotes 22
T4401 587-588 -RRB- denotes ]
T4402 588-589 . denotes .
T4403 589-766 sentence denotes Despite the derepression of S-opsin seen in the ventral portion of the rd7 retina, the normal dorsal repression of this gene is still present in this mutant (unpublished data).
T4404 590-597 IN denotes Despite
T4405 715-717 VBZ denotes is
T4406 598-601 DT denotes the
T4407 602-614 NN denotes derepression
T4408 615-617 IN denotes of
T4409 618-619 NN denotes S
T4410 620-625 NN denotes opsin
T4411 619-620 HYPH denotes -
T4412 626-630 VBN denotes seen
T4413 631-633 IN denotes in
T4414 634-637 DT denotes the
T4415 646-653 NN denotes portion
T4416 638-645 JJ denotes ventral
T4417 654-656 IN denotes of
T4418 657-660 DT denotes the
T4419 665-671 NN denotes retina
T4420 661-664 NN denotes rd7
T4421 671-673 , denotes ,
T4422 673-676 DT denotes the
T4423 691-701 NN denotes repression
T4424 677-683 JJ denotes normal
T4425 684-690 JJ denotes dorsal
T4426 702-704 IN denotes of
T4427 705-709 DT denotes this
T4428 710-714 NN denotes gene
T4429 718-723 RB denotes still
T4430 724-731 JJ denotes present
T4431 732-734 IN denotes in
T4432 735-739 DT denotes this
T4433 740-746 NN denotes mutant
T4434 747-748 -LRB- denotes (
T4435 760-764 NNS denotes data
T4436 748-759 JJ denotes unpublished
T4437 764-765 -RRB- denotes )
T4438 765-766 . denotes .
T4439 766-869 sentence denotes This finding is consistent with the normal expression pattern and function of Thrb2 in the rd7 mutant.
T4440 767-771 DT denotes This
T4441 772-779 NN denotes finding
T4442 780-782 VBZ denotes is
T4443 783-793 JJ denotes consistent
T4444 794-798 IN denotes with
T4445 799-802 DT denotes the
T4446 821-828 NN denotes pattern
T4447 803-809 JJ denotes normal
T4448 810-820 NN denotes expression
T4449 829-832 CC denotes and
T4450 833-841 NN denotes function
T4451 842-844 IN denotes of
T4452 845-850 NN denotes Thrb2
T4453 851-853 IN denotes in
T4454 854-857 DT denotes the
T4455 862-868 NN denotes mutant
T4456 858-861 NN denotes rd7
T4457 868-869 . denotes .
T4458 869-1031 sentence denotes One further finding to note is that the cell bodies of the M-opsin–positive cells appear to be scattered throughout the ONL in the rd7 mutant at P14 (Figure S8).
T4459 870-873 CD denotes One
T4460 882-889 NN denotes finding
T4461 874-881 JJ denotes further
T4462 898-900 VBZ denotes is
T4463 890-892 TO denotes to
T4464 893-897 VB denotes note
T4465 901-905 IN denotes that
T4466 952-958 VBP denotes appear
T4467 906-909 DT denotes the
T4468 915-921 NNS denotes bodies
T4469 910-914 NN denotes cell
T4470 922-924 IN denotes of
T4471 925-928 DT denotes the
T4472 946-951 NNS denotes cells
T4473 929-930 NN denotes M
T4474 931-936 NN denotes opsin
T4475 930-931 HYPH denotes -
T4476 937-945 JJ denotes positive
T4477 936-937 HYPH denotes –
T4478 959-961 TO denotes to
T4479 965-974 VBN denotes scattered
T4480 962-964 VB denotes be
T4481 975-985 IN denotes throughout
T4482 986-989 DT denotes the
T4483 990-993 NN denotes ONL
T4484 994-996 IN denotes in
T4485 997-1000 DT denotes the
T4486 1005-1011 NN denotes mutant
T4487 1001-1004 NN denotes rd7
T4488 1012-1014 IN denotes at
T4489 1015-1018 NN denotes P14
T4490 1019-1020 -LRB- denotes (
T4491 1027-1029 NN denotes S8
T4492 1020-1026 NN denotes Figure
T4493 1029-1030 -RRB- denotes )
T4494 1030-1031 . denotes .
T4495 1031-1126 sentence denotes Despite this fact, their overall number does not appear to be increased relative to wild-type.
T4496 1032-1039 IN denotes Despite
T4497 1081-1087 VB denotes appear
T4498 1040-1044 DT denotes this
T4499 1045-1049 NN denotes fact
T4500 1049-1051 , denotes ,
T4501 1051-1056 PRP$ denotes their
T4502 1065-1071 NN denotes number
T4503 1057-1064 JJ denotes overall
T4504 1072-1076 VBZ denotes does
T4505 1077-1080 RB denotes not
T4506 1088-1090 TO denotes to
T4507 1094-1103 VBN denotes increased
T4508 1091-1093 VB denotes be
T4509 1104-1112 JJ denotes relative
T4510 1113-1115 IN denotes to
T4511 1116-1120 JJ denotes wild
T4512 1121-1125 NN denotes type
T4513 1120-1121 HYPH denotes -
T4514 1125-1126 . denotes .
T4515 1126-1281 sentence denotes In addition, by P28, the M-opsin-positive cell bodies in rd7 appear to have relocated to their normal position at the scleral edge of the ONL (Figure S8).
T4516 1127-1129 IN denotes In
T4517 1188-1194 VBP denotes appear
T4518 1130-1138 NN denotes addition
T4519 1138-1140 , denotes ,
T4520 1140-1142 IN denotes by
T4521 1143-1146 NN denotes P28
T4522 1146-1148 , denotes ,
T4523 1148-1151 DT denotes the
T4524 1174-1180 NNS denotes bodies
T4525 1152-1153 NN denotes M
T4526 1154-1159 NN denotes opsin
T4527 1153-1154 HYPH denotes -
T4528 1160-1168 JJ denotes positive
T4529 1159-1160 HYPH denotes -
T4530 1169-1173 NN denotes cell
T4531 1181-1183 IN denotes in
T4532 1184-1187 NN denotes rd7
T4533 1195-1197 TO denotes to
T4534 1203-1212 VBN denotes relocated
T4535 1198-1202 VB denotes have
T4536 1213-1215 IN denotes to
T4537 1216-1221 PRP$ denotes their
T4538 1229-1237 NN denotes position
T4539 1222-1228 JJ denotes normal
T4540 1238-1240 IN denotes at
T4541 1241-1244 DT denotes the
T4542 1253-1257 NN denotes edge
T4543 1245-1252 JJ denotes scleral
T4544 1258-1260 IN denotes of
T4545 1261-1264 DT denotes the
T4546 1265-1268 NN denotes ONL
T4547 1269-1270 -LRB- denotes (
T4548 1277-1279 NN denotes S8
T4549 1270-1276 NN denotes Figure
T4550 1279-1280 -RRB- denotes )
T4551 1280-1281 . denotes .
T4552 1281-1482 sentence denotes It is known that until P11, the cell bodies of cone photoreceptors in the mouse are normally dispersed throughout the ONL, only to relocate subsequently to the scleral edge of the ONL around P12 [23].
T4553 1282-1284 PRP denotes It
T4554 1288-1293 VBN denotes known
T4555 1285-1287 VBZ denotes is
T4556 1294-1298 IN denotes that
T4557 1375-1384 VBN denotes dispersed
T4558 1299-1304 IN denotes until
T4559 1305-1308 NN denotes P11
T4560 1308-1310 , denotes ,
T4561 1310-1313 DT denotes the
T4562 1319-1325 NNS denotes bodies
T4563 1314-1318 NN denotes cell
T4564 1326-1328 IN denotes of
T4565 1329-1333 NN denotes cone
T4566 1334-1348 NNS denotes photoreceptors
T4567 1349-1351 IN denotes in
T4568 1352-1355 DT denotes the
T4569 1356-1361 NN denotes mouse
T4570 1362-1365 VBP denotes are
T4571 1366-1374 RB denotes normally
T4572 1385-1395 IN denotes throughout
T4573 1396-1399 DT denotes the
T4574 1400-1403 NN denotes ONL
T4575 1403-1405 , denotes ,
T4576 1405-1409 RB denotes only
T4577 1413-1421 VB denotes relocate
T4578 1410-1412 TO denotes to
T4579 1422-1434 RB denotes subsequently
T4580 1435-1437 IN denotes to
T4581 1438-1441 DT denotes the
T4582 1450-1454 NN denotes edge
T4583 1442-1449 JJ denotes scleral
T4584 1455-1457 IN denotes of
T4585 1458-1461 DT denotes the
T4586 1462-1465 NN denotes ONL
T4587 1466-1472 IN denotes around
T4588 1473-1476 NN denotes P12
T4589 1477-1478 -LRB- denotes [
T4590 1478-1480 CD denotes 23
T4591 1480-1481 -RRB- denotes ]
T4592 1481-1482 . denotes .
T4593 1482-1644 sentence denotes It is possible that in the rd7 mutant retina, there is a short delay in the relocation of the M-opsin–expressing cone cell bodies to the scleral edge of the ONL.
T4594 1483-1485 PRP denotes It
T4595 1486-1488 VBZ denotes is
T4596 1489-1497 JJ denotes possible
T4597 1498-1502 IN denotes that
T4598 1535-1537 VBZ denotes is
T4599 1503-1505 IN denotes in
T4600 1506-1509 DT denotes the
T4601 1521-1527 NN denotes retina
T4602 1510-1513 NN denotes rd7
T4603 1514-1520 NN denotes mutant
T4604 1527-1529 , denotes ,
T4605 1529-1534 EX denotes there
T4606 1538-1539 DT denotes a
T4607 1546-1551 NN denotes delay
T4608 1540-1545 JJ denotes short
T4609 1552-1554 IN denotes in
T4610 1555-1558 DT denotes the
T4611 1559-1569 NN denotes relocation
T4612 1570-1572 IN denotes of
T4613 1573-1576 DT denotes the
T4614 1606-1612 NNS denotes bodies
T4615 1577-1578 NN denotes M
T4616 1579-1584 NN denotes opsin
T4617 1578-1579 HYPH denotes -
T4618 1585-1595 VBG denotes expressing
T4619 1584-1585 HYPH denotes –
T4620 1596-1600 NN denotes cone
T4621 1601-1605 NN denotes cell
T4622 1613-1615 IN denotes to
T4623 1616-1619 DT denotes the
T4624 1628-1632 NN denotes edge
T4625 1620-1627 JJ denotes scleral
T4626 1633-1635 IN denotes of
T4627 1636-1639 DT denotes the
T4628 1640-1643 NN denotes ONL
T4629 1643-1644 . denotes .
R2711 T4277 T4278 compound M,Opsin
R2712 T4278 T4280 nsubj Opsin,Are
R2713 T4279 T4278 punct -,Opsin
R2714 T4281 T4278 cc and,Opsin
R2715 T4282 T4283 compound Thyroid,β2
R2716 T4283 T4278 conj β2,Opsin
R2717 T4284 T4283 compound Hormone,β2
R2718 T4285 T4283 compound Receptor,β2
R2719 T4286 T4280 acomp Unchanged,Are
R2720 T4287 T4280 prep in,Are
R2721 T4288 T4289 det the,Mutant
R2722 T4289 T4287 pobj Mutant,in
R2723 T4290 T4289 compound rd7,Mutant
R2724 T4292 T4293 advmod Only,genes
R2725 T4293 T4298 nsubj genes,failed
R2726 T4294 T4293 nummod two,genes
R2727 T4295 T4296 npadvmod cone,specific
R2728 T4296 T4293 amod specific,genes
R2729 T4297 T4296 punct -,specific
R2730 T4299 T4300 aux to,show
R2731 T4300 T4298 xcomp show,failed
R2732 T4301 T4302 det any,change
R2733 T4302 T4300 dobj change,show
R2734 T4303 T4302 prep in,change
R2735 T4304 T4303 pobj expression,in
R2736 T4305 T4300 prep by,show
R2737 T4306 T4307 preconj either,microarray
R2738 T4307 T4305 pobj microarray,by
R2739 T4308 T4307 cc or,microarray
R2740 T4309 T4310 advmod in,situ
R2741 T4310 T4311 amod situ,hybridization
R2742 T4311 T4307 conj hybridization,microarray
R2743 T4312 T4300 prep in,show
R2744 T4313 T4314 det the,mutant
R2745 T4314 T4312 pobj mutant,in
R2746 T4315 T4314 compound rd7,mutant
R2747 T4316 T4298 punct : ,failed
R2748 T4317 T4318 compound M,opsin
R2749 T4318 T4298 dobj opsin,failed
R2750 T4319 T4318 punct -,opsin
R2751 T4320 T4318 punct (,opsin
R2752 T4321 T4318 appos Opn1mw,opsin
R2753 T4322 T4318 punct ),opsin
R2754 T4323 T4318 cc and,opsin
R2755 T4324 T4325 compound thyroid,β2
R2756 T4325 T4318 conj β2,opsin
R2757 T4326 T4325 compound hormone,β2
R2758 T4327 T4325 compound receptor,β2
R2759 T4328 T4325 punct (,β2
R2760 T4329 T4325 appos Thrb2,β2
R2761 T4330 T4298 punct ),failed
R2762 T4331 T4332 punct (,S8
R2763 T4332 T4298 parataxis S8,failed
R2764 T4333 T4332 compound Figure,S8
R2765 T4334 T4332 punct ),S8
R2766 T4335 T4298 punct .,failed
R2767 T4337 T4338 det This,result
R2768 T4338 T4339 nsubj result,is
R2769 T4340 T4341 advmod particularly,notable
R2770 T4341 T4339 acomp notable,is
R2771 T4342 T4343 mark because,required
R2772 T4343 T4339 advcl required,is
R2773 T4344 T4343 nsubjpass Thrb2,required
R2774 T4345 T4343 auxpass is,required
R2775 T4346 T4343 advmod absolutely,required
R2776 T4347 T4343 prep for,required
R2777 T4348 T4349 det the,expression
R2778 T4349 T4347 pobj expression,for
R2779 T4350 T4349 prep of,expression
R2780 T4351 T4352 compound M,opsin
R2781 T4352 T4350 pobj opsin,of
R2782 T4353 T4352 punct -,opsin
R2783 T4354 T4355 punct [,22
R2784 T4355 T4339 parataxis 22,is
R2785 T4356 T4355 punct ],22
R2786 T4357 T4339 punct .,is
R2787 T4359 T4360 advmod Furthermore,thought
R2788 T4361 T4360 punct ", ",thought
R2789 T4362 T4363 det the,repression
R2790 T4363 T4360 nsubjpass repression,thought
R2791 T4364 T4363 prep of,repression
R2792 T4365 T4366 compound S,opsin
R2793 T4366 T4368 compound opsin,expression
R2794 T4367 T4366 punct -,opsin
R2795 T4368 T4364 pobj expression,of
R2796 T4369 T4363 prep in,repression
R2797 T4370 T4371 det the,third
R2798 T4371 T4369 pobj third,in
R2799 T4372 T4371 amod dorsal,third
R2800 T4373 T4371 prep of,third
R2801 T4374 T4375 det the,retina
R2802 T4375 T4373 pobj retina,of
R2803 T4376 T4375 compound mouse,retina
R2804 T4377 T4360 auxpass is,thought
R2805 T4378 T4379 aux to,depend
R2806 T4379 T4360 xcomp depend,thought
R2807 T4380 T4379 punct ", ",depend
R2808 T4381 T4382 advmod at,least
R2809 T4382 T4383 advmod least,in
R2810 T4383 T4379 prep in,depend
R2811 T4384 T4383 amod part,in
R2812 T4385 T4379 punct ", ",depend
R2813 T4386 T4379 prep on,depend
R2814 T4387 T4386 pobj Thrb2,on
R2815 T4388 T4389 mark since,shows
R2816 T4389 T4360 advcl shows,thought
R2817 T4390 T4391 compound S,opsin
R2818 T4391 T4389 nsubj opsin,shows
R2819 T4392 T4391 punct -,opsin
R2820 T4393 T4394 amod dorsal,derepression
R2821 T4394 T4389 dobj derepression,shows
R2822 T4395 T4389 prep in,shows
R2823 T4396 T4397 det the,mutant
R2824 T4397 T4395 pobj mutant,in
R2825 T4398 T4397 compound Thrb2,mutant
R2826 T4399 T4400 punct [,22
R2827 T4400 T4360 parataxis 22,thought
R2828 T4401 T4400 punct ],22
R2829 T4402 T4360 punct .,thought
R2830 T4404 T4405 prep Despite,is
R2831 T4406 T4407 det the,derepression
R2832 T4407 T4404 pobj derepression,Despite
R2833 T4408 T4407 prep of,derepression
R2834 T4409 T4410 compound S,opsin
R2835 T4410 T4408 pobj opsin,of
R2836 T4411 T4410 punct -,opsin
R2837 T4412 T4407 acl seen,derepression
R2838 T4413 T4412 prep in,seen
R2839 T4414 T4415 det the,portion
R2840 T4415 T4413 pobj portion,in
R2841 T4416 T4415 amod ventral,portion
R2842 T4417 T4415 prep of,portion
R2843 T4418 T4419 det the,retina
R2844 T4419 T4417 pobj retina,of
R2845 T4420 T4419 compound rd7,retina
R2846 T4421 T4405 punct ", ",is
R2847 T4422 T4423 det the,repression
R2848 T4423 T4405 nsubj repression,is
R2849 T4424 T4423 amod normal,repression
R2850 T4425 T4423 amod dorsal,repression
R2851 T4426 T4423 prep of,repression
R2852 T4427 T4428 det this,gene
R2853 T4428 T4426 pobj gene,of
R2854 T4429 T4405 advmod still,is
R2855 T4430 T4405 acomp present,is
R2856 T4431 T4405 prep in,is
R2857 T4432 T4433 det this,mutant
R2858 T4433 T4431 pobj mutant,in
R2859 T4434 T4435 punct (,data
R2860 T4435 T4405 meta data,is
R2861 T4436 T4435 amod unpublished,data
R2862 T4437 T4435 punct ),data
R2863 T4438 T4405 punct .,is
R2864 T4440 T4441 det This,finding
R2865 T4441 T4442 nsubj finding,is
R2866 T4443 T4442 acomp consistent,is
R2867 T4444 T4443 prep with,consistent
R2868 T4445 T4446 det the,pattern
R2869 T4446 T4444 pobj pattern,with
R2870 T4447 T4446 amod normal,pattern
R2871 T4448 T4446 compound expression,pattern
R2872 T4449 T4446 cc and,pattern
R2873 T4450 T4446 conj function,pattern
R2874 T4451 T4446 prep of,pattern
R2875 T4452 T4451 pobj Thrb2,of
R2876 T4453 T4446 prep in,pattern
R2877 T4454 T4455 det the,mutant
R2878 T4455 T4453 pobj mutant,in
R2879 T4456 T4455 compound rd7,mutant
R2880 T4457 T4442 punct .,is
R2881 T4459 T4460 nummod One,finding
R2882 T4460 T4462 nsubj finding,is
R2883 T4461 T4460 amod further,finding
R2884 T4463 T4464 aux to,note
R2885 T4464 T4460 advcl note,finding
R2886 T4465 T4466 mark that,appear
R2887 T4466 T4462 ccomp appear,is
R2888 T4467 T4468 det the,bodies
R2889 T4468 T4466 nsubj bodies,appear
R2890 T4469 T4468 compound cell,bodies
R2891 T4470 T4468 prep of,bodies
R2892 T4471 T4472 det the,cells
R2893 T4472 T4470 pobj cells,of
R2894 T4473 T4474 compound M,opsin
R2895 T4474 T4476 npadvmod opsin,positive
R2896 T4475 T4474 punct -,opsin
R2897 T4476 T4472 amod positive,cells
R2898 T4477 T4476 punct –,positive
R2899 T4478 T4479 aux to,scattered
R2900 T4479 T4466 xcomp scattered,appear
R2901 T4480 T4479 auxpass be,scattered
R2902 T4481 T4479 prep throughout,scattered
R2903 T4482 T4483 det the,ONL
R2904 T4483 T4481 pobj ONL,throughout
R2905 T4484 T4479 prep in,scattered
R2906 T4485 T4486 det the,mutant
R2907 T4486 T4484 pobj mutant,in
R2908 T4487 T4486 compound rd7,mutant
R2909 T4488 T4479 prep at,scattered
R2910 T4489 T4488 pobj P14,at
R2911 T4490 T4491 punct (,S8
R2912 T4491 T4466 parataxis S8,appear
R2913 T4492 T4491 compound Figure,S8
R2914 T4493 T4491 punct ),S8
R2915 T4494 T4462 punct .,is
R2916 T4496 T4497 prep Despite,appear
R2917 T4498 T4499 det this,fact
R2918 T4499 T4496 pobj fact,Despite
R2919 T4500 T4497 punct ", ",appear
R2920 T4501 T4502 poss their,number
R2921 T4502 T4497 nsubj number,appear
R2922 T4503 T4502 amod overall,number
R2923 T4504 T4497 aux does,appear
R2924 T4505 T4497 neg not,appear
R2925 T4506 T4507 aux to,increased
R2926 T4507 T4497 xcomp increased,appear
R2927 T4508 T4507 auxpass be,increased
R2928 T4509 T4507 advcl relative,increased
R2929 T4510 T4509 prep to,relative
R2930 T4511 T4512 amod wild,type
R2931 T4512 T4510 pobj type,to
R2932 T4513 T4512 punct -,type
R2933 T4514 T4497 punct .,appear
R2934 T4516 T4517 prep In,appear
R2935 T4518 T4516 pobj addition,In
R2936 T4519 T4517 punct ", ",appear
R2937 T4520 T4517 prep by,appear
R2938 T4521 T4520 pobj P28,by
R2939 T4522 T4517 punct ", ",appear
R2940 T4523 T4524 det the,bodies
R2941 T4524 T4517 nsubj bodies,appear
R2942 T4525 T4526 compound M,opsin
R2943 T4526 T4528 npadvmod opsin,positive
R2944 T4527 T4526 punct -,opsin
R2945 T4528 T4524 amod positive,bodies
R2946 T4529 T4528 punct -,positive
R2947 T4530 T4524 compound cell,bodies
R2948 T4531 T4524 prep in,bodies
R2949 T4532 T4531 pobj rd7,in
R2950 T4533 T4534 aux to,relocated
R2951 T4534 T4517 xcomp relocated,appear
R2952 T4535 T4534 aux have,relocated
R2953 T4536 T4534 prep to,relocated
R2954 T4537 T4538 poss their,position
R2955 T4538 T4536 pobj position,to
R2956 T4539 T4538 amod normal,position
R2957 T4540 T4538 prep at,position
R2958 T4541 T4542 det the,edge
R2959 T4542 T4540 pobj edge,at
R2960 T4543 T4542 amod scleral,edge
R2961 T4544 T4542 prep of,edge
R2962 T4545 T4546 det the,ONL
R2963 T4546 T4544 pobj ONL,of
R2964 T4547 T4548 punct (,S8
R2965 T4548 T4517 parataxis S8,appear
R2966 T4549 T4548 compound Figure,S8
R2967 T4550 T4548 punct ),S8
R2968 T4551 T4517 punct .,appear
R2969 T4553 T4554 nsubjpass It,known
R2970 T4555 T4554 auxpass is,known
R2971 T4556 T4557 mark that,dispersed
R2972 T4557 T4554 ccomp dispersed,known
R2973 T4558 T4557 prep until,dispersed
R2974 T4559 T4558 pobj P11,until
R2975 T4560 T4557 punct ", ",dispersed
R2976 T4561 T4562 det the,bodies
R2977 T4562 T4557 nsubjpass bodies,dispersed
R2978 T4563 T4562 compound cell,bodies
R2979 T4564 T4562 prep of,bodies
R2980 T4565 T4566 compound cone,photoreceptors
R2981 T4566 T4564 pobj photoreceptors,of
R2982 T4567 T4566 prep in,photoreceptors
R2983 T4568 T4569 det the,mouse
R2984 T4569 T4567 pobj mouse,in
R2985 T4570 T4557 auxpass are,dispersed
R2986 T4571 T4557 advmod normally,dispersed
R2987 T4572 T4557 prep throughout,dispersed
R2988 T4573 T4574 det the,ONL
R2989 T4574 T4572 pobj ONL,throughout
R2990 T4575 T4557 punct ", ",dispersed
R2991 T4576 T4577 advmod only,relocate
R2992 T4577 T4557 advcl relocate,dispersed
R2993 T4578 T4577 aux to,relocate
R2994 T4579 T4577 advmod subsequently,relocate
R2995 T4580 T4577 prep to,relocate
R2996 T4581 T4582 det the,edge
R2997 T4582 T4580 pobj edge,to
R2998 T4583 T4582 amod scleral,edge
R2999 T4584 T4582 prep of,edge
R3000 T4585 T4586 det the,ONL
R3001 T4586 T4584 pobj ONL,of
R3002 T4587 T4577 prep around,relocate
R3003 T4588 T4587 pobj P12,around
R3004 T4589 T4590 punct [,23
R3005 T4590 T4554 parataxis 23,known
R3006 T4591 T4590 punct ],23
R3007 T4592 T4554 punct .,known
R3008 T4594 T4595 nsubj It,is
R3009 T4596 T4595 acomp possible,is
R3010 T4597 T4598 mark that,is
R3011 T4598 T4595 ccomp is,is
R3012 T4599 T4598 prep in,is
R3013 T4600 T4601 det the,retina
R3014 T4601 T4599 pobj retina,in
R3015 T4602 T4601 compound rd7,retina
R3016 T4603 T4601 compound mutant,retina
R3017 T4604 T4598 punct ", ",is
R3018 T4605 T4598 expl there,is
R3019 T4606 T4607 det a,delay
R3020 T4607 T4598 attr delay,is
R3021 T4608 T4607 amod short,delay
R3022 T4609 T4607 prep in,delay
R3023 T4610 T4611 det the,relocation
R3024 T4611 T4609 pobj relocation,in
R3025 T4612 T4611 prep of,relocation
R3026 T4613 T4614 det the,bodies
R3027 T4614 T4612 pobj bodies,of
R3028 T4615 T4616 compound M,opsin
R3029 T4616 T4618 npadvmod opsin,expressing
R3030 T4617 T4616 punct -,opsin
R3031 T4618 T4614 amod expressing,bodies
R3032 T4619 T4618 punct –,expressing
R3033 T4620 T4614 compound cone,bodies
R3034 T4621 T4614 compound cell,bodies
R3035 T4622 T4611 prep to,relocation
R3036 T4623 T4624 det the,edge
R3037 T4624 T4622 pobj edge,to
R3038 T4625 T4624 amod scleral,edge
R3039 T4626 T4624 prep of,edge
R3040 T4627 T4628 det the,ONL
R3041 T4628 T4626 pobj ONL,of
R3042 T4629 T4595 punct .,is

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4213 0-7 PR_EXT:000001224 denotes M-Opsin
T4214 12-27 CHEBI_EXT:60311 denotes Thyroid Hormone
T4215 12-36 GO_EXT:0004887 denotes Thyroid Hormone Receptor
T4216 12-39 PR_EXT:000016321 denotes Thyroid Hormone Receptor β2
T4217 65-71 SO_EXT:sequence_altered_entity denotes Mutant
T4218 81-85 CL:0000573 denotes cone
T4219 95-100 SO_EXT:0000704 denotes genes
T4220 130-140 GO:0010467 denotes expression
T4221 173-186 GO:0097617 denotes hybridization
T4222 198-204 SO_EXT:sequence_altered_entity denotes mutant
T4223 206-213 PR_EXT:000001224 denotes M-opsin
T4224 215-221 PR_EXT:000001224 denotes Opn1mw
T4225 227-234 UBERON:0002046 denotes thyroid
T4226 227-242 CHEBI_EXT:60311 denotes thyroid hormone
T4227 227-251 GO_EXT:0004887 denotes thyroid hormone receptor
T4228 227-254 PR_EXT:000016321 denotes thyroid hormone receptor β2
T4229 256-261 PR_EXT:000016321 denotes Thrb2
T4230 320-325 PR_EXT:000016321 denotes Thrb2
T4231 357-367 GO:0010467 denotes expression
T4232 371-378 PR_EXT:000001224 denotes M-opsin
T4233 416-423 PR_EXT:000001195 denotes S-opsin
T4234 424-434 GO:0010467 denotes expression
T4235 462-467 NCBITaxon:10088 denotes mouse
T4236 468-474 UBERON:0000966 denotes retina
T4237 518-523 PR_EXT:000016321 denotes Thrb2
T4238 530-537 PR_EXT:000001195 denotes S-opsin
T4239 571-576 PR_EXT:000016321 denotes Thrb2
T4240 577-583 SO_EXT:sequence_altered_entity denotes mutant
T4241 618-625 PR_EXT:000001195 denotes S-opsin
T4242 665-671 UBERON:0000966 denotes retina
T4243 710-714 SO_EXT:0000704 denotes gene
T4244 740-746 SO_EXT:sequence_altered_entity denotes mutant
T4245 810-820 GO:0010467 denotes expression
T4246 845-850 PR_EXT:000016321 denotes Thrb2
T4247 862-868 SO_EXT:sequence_altered_entity denotes mutant
T4248 910-914 CL_GO_EXT:cell denotes cell
T4249 910-921 GO:0044297 denotes cell bodies
T4250 929-936 PR_EXT:000001224 denotes M-opsin
T4251 946-951 CL_GO_EXT:cell denotes cells
T4252 990-993 UBERON:0001789 denotes ONL
T4253 1005-1011 SO_EXT:sequence_altered_entity denotes mutant
T4254 1116-1125 SO_EXT:wild_type_entity_or_quality denotes wild-type
T4255 1152-1159 PR_EXT:000001224 denotes M-opsin
T4256 1169-1173 CL_GO_EXT:cell denotes cell
T4257 1169-1180 GO:0044297 denotes cell bodies
T4258 1203-1212 GO_EXT:biological_movement_or_translocation_process denotes relocated
T4259 1245-1252 UBERON:0001773 denotes scleral
T4260 1265-1268 UBERON:0001789 denotes ONL
T4261 1314-1318 CL_GO_EXT:cell denotes cell
T4262 1314-1325 GO:0044297 denotes cell bodies
T4263 1329-1348 CL:0000573 denotes cone photoreceptors
T4264 1356-1361 NCBITaxon:10088 denotes mouse
T4265 1400-1403 UBERON:0001789 denotes ONL
T4266 1442-1449 UBERON:0001773 denotes scleral
T4267 1462-1465 UBERON:0001789 denotes ONL
T4268 1514-1520 SO_EXT:sequence_altered_entity_or_alteration_process denotes mutant
T4269 1521-1527 UBERON:0000966 denotes retina
T4270 1577-1584 PR_EXT:000001224 denotes M-opsin
T4271 1585-1595 GO:0010467 denotes expressing
T4272 1596-1600 CL:0000306 denotes cone
T4273 1601-1605 CL_GO_EXT:cell denotes cell
T4274 1601-1612 GO:0044297 denotes cell bodies
T4275 1620-1627 UBERON:0001773 denotes scleral
T4276 1640-1643 UBERON:0001789 denotes ONL

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4165 0-7 PR:000001224 denotes M-Opsin
T4166 12-27 CHEBI:60311 denotes Thyroid Hormone
T4167 12-39 PR:000016321 denotes Thyroid Hormone Receptor β2
T4168 81-85 CL:0000573 denotes cone
T4169 95-100 SO:0000704 denotes genes
T4170 130-140 GO:0010467 denotes expression
T4171 173-186 GO:0097617 denotes hybridization
T4172 206-213 PR:000001224 denotes M-opsin
T4173 215-221 PR:000001224 denotes Opn1mw
T4174 227-234 UBERON:0002046 denotes thyroid
T4175 227-242 CHEBI:60311 denotes thyroid hormone
T4176 227-254 PR:000016321 denotes thyroid hormone receptor β2
T4177 256-261 PR:000016321 denotes Thrb2
T4178 320-325 PR:000016321 denotes Thrb2
T4179 357-367 GO:0010467 denotes expression
T4180 371-378 PR:000001224 denotes M-opsin
T4181 416-423 PR:000001195 denotes S-opsin
T4182 424-434 GO:0010467 denotes expression
T4183 462-467 NCBITaxon:10088 denotes mouse
T4184 468-474 UBERON:0000966 denotes retina
T4185 518-523 PR:000016321 denotes Thrb2
T4186 530-537 PR:000001195 denotes S-opsin
T4187 571-576 PR:000016321 denotes Thrb2
T4188 618-625 PR:000001195 denotes S-opsin
T4189 665-671 UBERON:0000966 denotes retina
T4190 710-714 SO:0000704 denotes gene
T4191 810-820 GO:0010467 denotes expression
T4192 845-850 PR:000016321 denotes Thrb2
T4193 910-921 GO:0044297 denotes cell bodies
T4194 929-936 PR:000001224 denotes M-opsin
T4195 990-993 UBERON:0001789 denotes ONL
T4196 1152-1159 PR:000001224 denotes M-opsin
T4197 1169-1180 GO:0044297 denotes cell bodies
T4198 1245-1252 UBERON:0001773 denotes scleral
T4199 1265-1268 UBERON:0001789 denotes ONL
T4200 1314-1325 GO:0044297 denotes cell bodies
T4201 1329-1348 CL:0000573 denotes cone photoreceptors
T4202 1356-1361 NCBITaxon:10088 denotes mouse
T4203 1400-1403 UBERON:0001789 denotes ONL
T4204 1442-1449 UBERON:0001773 denotes scleral
T4205 1462-1465 UBERON:0001789 denotes ONL
T4206 1521-1527 UBERON:0000966 denotes retina
T4207 1577-1584 PR:000001224 denotes M-opsin
T4208 1585-1595 GO:0010467 denotes expressing
T4209 1596-1600 CL:0000306 denotes cone
T4210 1601-1612 GO:0044297 denotes cell bodies
T4211 1620-1627 UBERON:0001773 denotes scleral
T4212 1640-1643 UBERON:0001789 denotes ONL

2_test

Id Subject Object Predicate Lexical cue
16110338-11138006-85798518 380-382 11138006 denotes 22
16110338-11138006-85798519 585-587 11138006 denotes 22
16110338-9364238-85798520 1478-1480 9364238 denotes 23
T78176 380-382 11138006 denotes 22
T92947 585-587 11138006 denotes 22
T75033 1478-1480 9364238 denotes 23