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PMC:1166548 / 4084-4906 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T1147 0-8 JJ denotes Previous
T1148 9-13 NN denotes work
T1149 68-78 VBN denotes identified
T1150 14-19 VBG denotes using
T1151 20-25 JJ denotes human
T1152 26-34 NNS denotes patients
T1153 35-38 CC denotes and
T1154 39-50 RB denotes genetically
T1155 51-58 VBN denotes altered
T1156 59-63 NNS denotes mice
T1157 64-67 VBZ denotes has
T1158 79-83 DT denotes some
T1159 93-98 NNS denotes genes
T1160 84-92 NN denotes modifier
T1161 99-102 CC denotes and
T1162 103-107 VBP denotes have
T1163 108-116 VBN denotes advanced
T1164 117-120 PRP$ denotes our
T1165 121-134 NN denotes understanding
T1166 135-137 IN denotes of
T1167 138-140 NN denotes CF
T1168 141-156 NN denotes pathophysiology
T1169 157-158 -LRB- denotes [
T1170 158-159 CD denotes 4
T1171 159-160 -RRB- denotes ]
T1172 160-161 . denotes .
T1173 161-415 sentence denotes In one study using CF mice on different genetic backgrounds, a region on mouse chromosome 7 was shown to ameliorate intestinal blockage and the effect was in part due to a calcium-regulated Cl-channel which compensated for loss of CFTR function [16,17].
T1174 162-164 IN denotes In
T1175 258-263 VBN denotes shown
T1176 165-168 CD denotes one
T1177 169-174 NN denotes study
T1178 175-180 VBG denotes using
T1179 181-183 NN denotes CF
T1180 184-188 NNS denotes mice
T1181 189-191 IN denotes on
T1182 192-201 JJ denotes different
T1183 210-221 NNS denotes backgrounds
T1184 202-209 JJ denotes genetic
T1185 221-223 , denotes ,
T1186 223-224 DT denotes a
T1187 225-231 NN denotes region
T1188 232-234 IN denotes on
T1189 235-240 NN denotes mouse
T1190 241-251 NN denotes chromosome
T1191 252-253 CD denotes 7
T1192 254-257 VBD denotes was
T1193 264-266 TO denotes to
T1194 267-277 VB denotes ameliorate
T1195 278-288 JJ denotes intestinal
T1196 289-297 NN denotes blockage
T1197 298-301 CC denotes and
T1198 302-305 DT denotes the
T1199 306-312 NN denotes effect
T1200 313-316 VBD denotes was
T1201 317-319 IN denotes in
T1202 320-324 JJ denotes part
T1203 325-328 IN denotes due
T1204 329-331 IN denotes to
T1205 332-333 DT denotes a
T1206 355-362 NN denotes channel
T1207 334-341 NN denotes calcium
T1208 342-351 VBN denotes regulated
T1209 341-342 HYPH denotes -
T1210 352-354 NN denotes Cl
T1211 354-355 SYM denotes -
T1212 363-368 WDT denotes which
T1213 369-380 VBD denotes compensated
T1214 381-384 IN denotes for
T1215 385-389 NN denotes loss
T1216 390-392 IN denotes of
T1217 393-397 NN denotes CFTR
T1218 398-406 NN denotes function
T1219 407-408 -LRB- denotes [
T1220 411-413 CD denotes 17
T1221 408-410 CD denotes 16
T1222 410-411 , denotes ,
T1223 413-414 -RRB- denotes ]
T1224 414-415 . denotes .
T1225 415-556 sentence denotes Marker haplotypes of the syntenic region of human chromosome 19q13 were also shown to be associated with the risk of MI in CF patients [18].
T1226 416-422 NN denotes Marker
T1227 423-433 NNS denotes haplotypes
T1228 493-498 VBN denotes shown
T1229 434-436 IN denotes of
T1230 437-440 DT denotes the
T1231 450-456 NN denotes region
T1232 441-449 JJ denotes syntenic
T1233 457-459 IN denotes of
T1234 460-465 JJ denotes human
T1235 466-476 NN denotes chromosome
T1236 477-482 CD denotes 19q13
T1237 483-487 VBD denotes were
T1238 488-492 RB denotes also
T1239 499-501 TO denotes to
T1240 505-515 VBN denotes associated
T1241 502-504 VB denotes be
T1242 516-520 IN denotes with
T1243 521-524 DT denotes the
T1244 525-529 NN denotes risk
T1245 530-532 IN denotes of
T1246 533-535 NN denotes MI
T1247 536-538 IN denotes in
T1248 539-541 NN denotes CF
T1249 542-550 NNS denotes patients
T1250 551-552 -LRB- denotes [
T1251 552-554 CD denotes 18
T1252 554-555 -RRB- denotes ]
T1253 555-556 . denotes .
T1254 556-822 sentence denotes In other work, a region on mouse chr. 6 was strongly associated with lung inflammation, consisting of mononuclear cell interstitial infiltration and fibrosis in CF mouse airways; and other loci on chr. 1, 2, 10, and 17 were also linked to the airway phenotype [19].
T1255 557-559 IN denotes In
T1256 610-620 VBN denotes associated
T1257 560-565 JJ denotes other
T1258 566-570 NN denotes work
T1259 570-572 , denotes ,
T1260 572-573 DT denotes a
T1261 574-580 NN denotes region
T1262 581-583 IN denotes on
T1263 584-589 NN denotes mouse
T1264 590-594 NN denotes chr.
T1265 595-596 CD denotes 6
T1266 597-600 VBD denotes was
T1267 601-609 RB denotes strongly
T1268 621-625 IN denotes with
T1269 626-630 NN denotes lung
T1270 631-643 NN denotes inflammation
T1271 643-645 , denotes ,
T1272 645-655 VBG denotes consisting
T1273 656-658 IN denotes of
T1274 659-670 JJ denotes mononuclear
T1275 671-675 NN denotes cell
T1276 689-701 NN denotes infiltration
T1277 676-688 JJ denotes interstitial
T1278 702-705 CC denotes and
T1279 706-714 NN denotes fibrosis
T1280 715-717 IN denotes in
T1281 718-720 NN denotes CF
T1282 727-734 NNS denotes airways
T1283 721-726 NN denotes mouse
T1284 734-735 : denotes ;
T1285 736-739 CC denotes and
T1286 740-745 JJ denotes other
T1287 746-750 NNS denotes loci
T1288 786-792 VBN denotes linked
T1289 751-753 IN denotes on
T1290 754-758 NN denotes chr.
T1291 759-760 CD denotes 1
T1292 760-762 , denotes ,
T1293 762-763 CD denotes 2
T1294 763-765 , denotes ,
T1295 765-767 CD denotes 10
T1296 767-769 , denotes ,
T1297 769-772 CC denotes and
T1298 773-775 CD denotes 17
T1299 776-780 VBD denotes were
T1300 781-785 RB denotes also
T1301 793-795 IN denotes to
T1302 796-799 DT denotes the
T1303 807-816 NN denotes phenotype
T1304 800-806 NN denotes airway
T1305 817-818 -LRB- denotes [
T1306 818-820 CD denotes 19
T1307 820-821 -RRB- denotes ]
T1308 821-822 . denotes .
R714 T1147 T1148 amod Previous,work
R715 T1148 T1149 nsubj work,identified
R716 T1150 T1148 acl using,work
R717 T1151 T1152 amod human,patients
R718 T1152 T1150 dobj patients,using
R719 T1153 T1152 cc and,patients
R720 T1154 T1155 advmod genetically,altered
R721 T1155 T1156 amod altered,mice
R722 T1156 T1152 conj mice,patients
R723 T1157 T1149 aux has,identified
R724 T1158 T1159 det some,genes
R725 T1159 T1149 dobj genes,identified
R726 T1160 T1159 compound modifier,genes
R727 T1161 T1149 cc and,identified
R728 T1162 T1163 aux have,advanced
R729 T1163 T1149 conj advanced,identified
R730 T1164 T1165 poss our,understanding
R731 T1165 T1163 dobj understanding,advanced
R732 T1166 T1165 prep of,understanding
R733 T1167 T1168 compound CF,pathophysiology
R734 T1168 T1166 pobj pathophysiology,of
R735 T1169 T1170 punct [,4
R736 T1170 T1163 parataxis 4,advanced
R737 T1171 T1170 punct ],4
R738 T1172 T1149 punct .,identified
R739 T1174 T1175 prep In,shown
R740 T1176 T1177 nummod one,study
R741 T1177 T1174 pobj study,In
R742 T1178 T1177 acl using,study
R743 T1179 T1180 compound CF,mice
R744 T1180 T1178 dobj mice,using
R745 T1181 T1180 prep on,mice
R746 T1182 T1183 amod different,backgrounds
R747 T1183 T1181 pobj backgrounds,on
R748 T1184 T1183 amod genetic,backgrounds
R749 T1185 T1175 punct ", ",shown
R750 T1186 T1187 det a,region
R751 T1187 T1175 nsubjpass region,shown
R752 T1188 T1187 prep on,region
R753 T1189 T1190 compound mouse,chromosome
R754 T1190 T1188 pobj chromosome,on
R755 T1191 T1190 nummod 7,chromosome
R756 T1192 T1175 auxpass was,shown
R757 T1193 T1194 aux to,ameliorate
R758 T1194 T1175 xcomp ameliorate,shown
R759 T1195 T1196 amod intestinal,blockage
R760 T1196 T1194 dobj blockage,ameliorate
R761 T1197 T1175 cc and,shown
R762 T1198 T1199 det the,effect
R763 T1199 T1200 nsubj effect,was
R764 T1200 T1175 conj was,shown
R765 T1201 T1200 prep in,was
R766 T1202 T1201 amod part,in
R767 T1203 T1200 prep due,was
R768 T1204 T1203 pcomp to,due
R769 T1205 T1206 det a,channel
R770 T1206 T1203 pobj channel,due
R771 T1207 T1208 npadvmod calcium,regulated
R772 T1208 T1206 amod regulated,channel
R773 T1209 T1208 punct -,regulated
R774 T1210 T1206 nmod Cl,channel
R775 T1211 T1206 punct -,channel
R776 T1212 T1213 dep which,compensated
R777 T1213 T1206 relcl compensated,channel
R778 T1214 T1213 prep for,compensated
R779 T1215 T1214 pobj loss,for
R780 T1216 T1215 prep of,loss
R781 T1217 T1218 compound CFTR,function
R782 T1218 T1216 pobj function,of
R783 T1219 T1220 punct [,17
R784 T1220 T1200 parataxis 17,was
R785 T1221 T1220 nummod 16,17
R786 T1222 T1220 punct ",",17
R787 T1223 T1220 punct ],17
R788 T1224 T1200 punct .,was
R789 T1226 T1227 compound Marker,haplotypes
R790 T1227 T1228 nsubjpass haplotypes,shown
R791 T1229 T1227 prep of,haplotypes
R792 T1230 T1231 det the,region
R793 T1231 T1229 pobj region,of
R794 T1232 T1231 amod syntenic,region
R795 T1233 T1231 prep of,region
R796 T1234 T1235 amod human,chromosome
R797 T1235 T1233 pobj chromosome,of
R798 T1236 T1235 nummod 19q13,chromosome
R799 T1237 T1228 auxpass were,shown
R800 T1238 T1228 advmod also,shown
R801 T1239 T1240 aux to,associated
R802 T1240 T1228 xcomp associated,shown
R803 T1241 T1240 auxpass be,associated
R804 T1242 T1240 prep with,associated
R805 T1243 T1244 det the,risk
R806 T1244 T1242 pobj risk,with
R807 T1245 T1244 prep of,risk
R808 T1246 T1245 pobj MI,of
R809 T1247 T1240 prep in,associated
R810 T1248 T1249 compound CF,patients
R811 T1249 T1247 pobj patients,in
R812 T1250 T1251 punct [,18
R813 T1251 T1228 parataxis 18,shown
R814 T1252 T1251 punct ],18
R815 T1253 T1228 punct .,shown
R816 T1255 T1256 prep In,associated
R817 T1257 T1258 amod other,work
R818 T1258 T1255 pobj work,In
R819 T1259 T1256 punct ", ",associated
R820 T1260 T1261 det a,region
R821 T1261 T1256 nsubjpass region,associated
R822 T1262 T1261 prep on,region
R823 T1263 T1264 compound mouse,chr.
R824 T1264 T1262 pobj chr.,on
R825 T1265 T1264 nummod 6,chr.
R826 T1266 T1256 auxpass was,associated
R827 T1267 T1256 advmod strongly,associated
R828 T1268 T1256 prep with,associated
R829 T1269 T1270 compound lung,inflammation
R830 T1270 T1268 pobj inflammation,with
R831 T1271 T1270 punct ", ",inflammation
R832 T1272 T1270 acl consisting,inflammation
R833 T1273 T1272 prep of,consisting
R834 T1274 T1275 amod mononuclear,cell
R835 T1275 T1276 nmod cell,infiltration
R836 T1276 T1273 pobj infiltration,of
R837 T1277 T1276 amod interstitial,infiltration
R838 T1278 T1276 cc and,infiltration
R839 T1279 T1276 conj fibrosis,infiltration
R840 T1280 T1272 prep in,consisting
R841 T1281 T1282 compound CF,airways
R842 T1282 T1280 pobj airways,in
R843 T1283 T1282 compound mouse,airways
R844 T1284 T1256 punct ;,associated
R845 T1285 T1256 cc and,associated
R846 T1286 T1287 amod other,loci
R847 T1287 T1288 nsubjpass loci,linked
R848 T1288 T1256 conj linked,associated
R849 T1289 T1287 prep on,loci
R850 T1290 T1291 nmod chr.,1
R851 T1291 T1289 pobj 1,on
R852 T1292 T1291 punct ", ",1
R853 T1293 T1291 conj 2,1
R854 T1294 T1293 punct ", ",2
R855 T1295 T1293 conj 10,2
R856 T1296 T1295 punct ", ",10
R857 T1297 T1295 cc and,10
R858 T1298 T1295 conj 17,10
R859 T1299 T1288 auxpass were,linked
R860 T1300 T1288 advmod also,linked
R861 T1301 T1288 prep to,linked
R862 T1302 T1303 det the,phenotype
R863 T1303 T1301 pobj phenotype,to
R864 T1304 T1303 compound airway,phenotype
R865 T1305 T1306 punct [,19
R866 T1306 T1288 parataxis 19,linked
R867 T1307 T1306 punct ],19
R868 T1308 T1256 punct .,associated

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T740 20-25 NCBITaxon:9606 denotes human
T741 39-50 SO_EXT:0000704 denotes genetically
T742 51-58 SO_EXT:sequence_alteration_process denotes altered
T743 59-63 NCBITaxon:10088 denotes mice
T744 93-98 SO_EXT:0000704 denotes genes
T745 184-188 NCBITaxon:10088 denotes mice
T746 202-209 SO_EXT:0000704 denotes genetic
T747 225-234 _FRAGMENT denotes region on
T748 241-251 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosome
T749 235-240 NCBITaxon:10088 denotes mouse
T750 278-288 UBERON:0000160 denotes intestinal
T751 334-341 CHEBI_EXT:calcium denotes calcium
T752 342-351 GO:0065007 denotes regulated
T753 352-354 CHEBI_EXT:chlorine denotes Cl
T754 352-362 GO_EXT:0005254 denotes Cl-channel
T755 393-397 PR_EXT:000001044 denotes CFTR
T756 416-422 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes Marker
T757 423-433 SO_EXT:0001024 denotes haplotypes
T758 441-456 SO_EXT:0005858 denotes syntenic region
T759 450-459 _FRAGMENT denotes region of
T760 466-476 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosome
T761 460-465 NCBITaxon:9606 denotes human
T762 574-583 _FRAGMENT denotes region on
T763 590-594 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chr.
T764 584-589 NCBITaxon:10088 denotes mouse
T765 626-630 UBERON:0002048 denotes lung
T766 631-643 GO_PATO_EXT:inflammatory_process_or_quality denotes inflammation
T767 659-675 CL:0000842 denotes mononuclear cell
T768 663-670 GO:0005634 denotes nuclear
T769 671-675 CL_GO_EXT:cell denotes cell
T770 676-688 UBERON:0005169 denotes interstitial
T771 721-726 NCBITaxon:10088 denotes mouse
T772 727-734 UBERON:0001005 denotes airways
T773 746-758 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes loci on chr.
T774 800-806 UBERON:0001005 denotes airway
R376 T748 T747 _lexicallyChainedTo chromosome,region on
R377 T760 T759 _lexicallyChainedTo chromosome,region of
R378 T763 T762 _lexicallyChainedTo chr.,region on

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T646 20-25 NCBITaxon:9606 denotes human
T647 39-50 SO:0000704 denotes genetically
T648 59-63 NCBITaxon:10088 denotes mice
T649 93-98 SO:0000704 denotes genes
T650 184-188 NCBITaxon:10088 denotes mice
T651 202-209 SO:0000704 denotes genetic
T652 235-240 NCBITaxon:10088 denotes mouse
T653 278-288 UBERON:0000160 denotes intestinal
T654 342-351 GO:0065007 denotes regulated
T655 393-397 PR:000001044 denotes CFTR
T656 423-433 SO:0001024 denotes haplotypes
T657 441-456 SO:0005858 denotes syntenic region
T658 460-465 NCBITaxon:9606 denotes human
T659 584-589 NCBITaxon:10088 denotes mouse
T660 626-630 UBERON:0002048 denotes lung
T661 659-675 CL:0000842 denotes mononuclear cell
T662 663-670 GO:0005634 denotes nuclear
T663 676-688 UBERON:0005169 denotes interstitial
T664 721-726 NCBITaxon:10088 denotes mouse
T665 727-734 UBERON:0001005 denotes airways
T666 800-806 UBERON:0001005 denotes airway