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PMC:1166548 / 19494-20141 JSONTXT

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Id Subject Object Predicate Lexical cue
T4703 646-647 . denotes .
T4702 619-625 NNP denotes Genome
T4701 626-637 NNP denotes Informatics
T4700 613-618 NNP denotes Mouse
T4699 638-645 NN denotes website
T4665 508-509 -RRB- denotes )
T4664 506-508 NN denotes cM
T4663 501-505 CD denotes 94.2
T4662 499-501 , denotes ,
T4661 494-499 NN denotes chr.1
T4660 493-494 -LRB- denotes (
T4659 487-492 NN denotes Kcnj9
T4658 485-487 : denotes :
T4657 470-475 NN denotes fluid
T4656 466-469 CC denotes and
T4655 476-485 NN denotes transport
T4654 454-465 NN denotes electrolyte
T4653 441-446 MD denotes could
T4652 429-440 RB denotes potentially
T4651 447-453 VB denotes affect
T4650 424-428 WDT denotes that
T4649 405-415 VBN denotes identified
T4648 416-423 NNS denotes regions
T4647 401-404 DT denotes the
T4646 398-400 IN denotes in
T4645 384-391 NN denotes channel
T4644 374-383 NN denotes potassium
T4643 392-397 NNS denotes genes
T4642 366-373 JJ denotes several
T4641 362-365 VBP denotes are
T4640 356-361 EX denotes There
T4639 355-584 sentence denotes There are several potassium channel genes in the identified regions that potentially could affect electrolyte and fluid transport: Kcnj9 (chr.1, 94.2 cM), Kcnj10 (chr.1, 93.5 cM), Kcnj5 (chr.9, 11 cM), and Kcnc2 (chr.10, 62 cM).
T4638 354-355 . denotes .
T4637 338-344 JJR denotes milder
T4636 345-354 NN denotes phenotype
T4635 334-337 DT denotes the
T4634 329-333 IN denotes with
T4633 318-328 VBN denotes associated
T4632 300-305 CD denotes three
T4631 306-317 NNS denotes chromosomes
T4630 296-299 DT denotes the
T4629 293-295 IN denotes of
T4628 285-292 NNS denotes regions
T4627 281-284 DT denotes the
T4626 278-280 IN denotes in
T4625 261-268 JJ denotes missing
T4624 269-273 NN denotes CFTR
T4623 257-260 DT denotes the
T4622 253-256 IN denotes for
T4621 236-241 MD denotes might
T4620 242-252 VB denotes substitute
T4619 231-235 WDT denotes that
T4618 213-221 NN denotes chloride
T4617 207-212 JJ denotes known
T4616 222-230 NNS denotes channels
T4615 203-206 DT denotes the
T4614 200-202 IN denotes of
T4613 274-277 VBP denotes are
T4612 195-199 NN denotes None
T4611 194-355 sentence denotes None of the known chloride channels that might substitute for the missing CFTR are in the regions of the three chromosomes associated with the milder phenotype.
T4610 193-194 . denotes .
T4609 173-183 JJ denotes intestinal
T4608 170-172 NN denotes CF
T4607 163-169 JJR denotes milder
T4606 184-193 NN denotes phenotype
T4605 159-162 DT denotes the
T4604 156-158 IN denotes to
T4603 146-155 NN denotes relevance
T4602 136-145 JJ denotes potential
T4601 132-135 IN denotes for
T4600 129-131 IN denotes at
T4599 117-121 VBD denotes were
T4598 109-116 NNS denotes markers
T4597 105-108 DT denotes the
T4596 102-104 IN denotes of
T4595 97-101 NN denotes side
T4594 90-96 DT denotes either
T4593 87-89 IN denotes on
T4592 78-86 NN denotes interval
T4591 73-77 DT denotes this
T4590 70-72 IN denotes of
T4589 68-69 NN denotes %
T4588 66-68 CD denotes 75
T4587 59-65 IN denotes within
T4586 53-58 NNS denotes genes
T4585 51-53 , denotes ,
T4584 49-51 NN denotes cM
T4583 46-48 CD denotes 12
T4582 40-45 IN denotes about
T4698 609-612 DT denotes the
T4697 604-608 IN denotes from
T4696 600-603 VBP denotes are
T4695 589-593 NN denotes gene
T4694 594-599 NNS denotes names
T4693 585-588 DT denotes All
T4692 584-647 sentence denotes All gene names are from the Mouse Genome Informatics website .
T4691 583-584 . denotes .
T4690 582-583 -RRB- denotes )
T4689 580-582 NN denotes cM
T4688 577-579 CD denotes 62
T4687 575-577 , denotes ,
T4686 569-575 NN denotes chr.10
T4685 568-569 -LRB- denotes (
T4684 562-567 NN denotes Kcnc2
T4683 558-561 CC denotes and
T4682 556-558 , denotes ,
T4681 555-556 -RRB- denotes )
T4680 550-552 CD denotes 11
T4679 548-550 , denotes ,
T4678 543-548 NN denotes chr.9
T4677 553-555 NN denotes cM
T4676 542-543 -LRB- denotes (
T4675 536-541 NN denotes Kcnj5
T4674 534-536 , denotes ,
T4673 533-534 -RRB- denotes )
T4672 531-533 NN denotes cM
T4671 526-530 CD denotes 93.5
T4670 524-526 , denotes ,
T4669 519-524 NN denotes chr.1
T4668 518-519 -LRB- denotes (
T4667 511-517 NN denotes Kcnj10
T4666 509-511 , denotes ,
T4573 13-14 NNS denotes p
T4572 14-15 VBN denotes a
T4571 13-15 sentence denotes pa
T4570 8-11 DT denotes the
T4569 12-13 NNS denotes s
T4568 8-13 sentence denotes the s
T4567 6-7 VBN denotes e
T4566 6-8 sentence denotes e
T4565 3-6 NNS denotes aus
T4564 2-3 NNS denotes c
T4563 1-2 NNS denotes e
T4562 0-1 NN denotes B
T4561 0-6 sentence denotes Becaus
T4581 122-128 VBN denotes looked
T4580 31-35 VBN denotes used
T4579 23-30 NNS denotes markers
T4578 20-22 IN denotes of
T4577 16-19 NN denotes ing
T4576 36-39 VBD denotes was
T4575 15-16 IN denotes c
T4574 15-194 sentence denotes cing of markers used was about 12 cM, genes within 75% of this interval on either side of the markers were looked at for potential relevance to the milder CF intestinal phenotype.
R2806 T4595 T4593 pobj side,on
R2807 T4596 T4595 prep of,side
R2808 T4597 T4598 det the,markers
R2809 T4598 T4596 pobj markers,of
R2810 T4599 T4581 auxpass were,looked
R2811 T4600 T4581 prep at,looked
R2812 T4601 T4581 prep for,looked
R2813 T4602 T4603 amod potential,relevance
R2814 T4603 T4601 pobj relevance,for
R2815 T4604 T4603 prep to,relevance
R2816 T4605 T4606 det the,phenotype
R2817 T4606 T4604 pobj phenotype,to
R2818 T4607 T4606 amod milder,phenotype
R2819 T4608 T4606 nmod CF,phenotype
R2820 T4609 T4606 amod intestinal,phenotype
R2821 T4610 T4581 punct .,looked
R2822 T4612 T4613 nsubj None,are
R2823 T4614 T4612 prep of,None
R2824 T4615 T4616 det the,channels
R2825 T4616 T4614 pobj channels,of
R2826 T4617 T4616 amod known,channels
R2827 T4618 T4616 compound chloride,channels
R2828 T4619 T4620 dep that,substitute
R2829 T4620 T4616 relcl substitute,channels
R2830 T4621 T4620 aux might,substitute
R2831 T4622 T4620 prep for,substitute
R2832 T4623 T4624 det the,CFTR
R2833 T4624 T4622 pobj CFTR,for
R2834 T4625 T4624 amod missing,CFTR
R2835 T4626 T4613 prep in,are
R2836 T4627 T4628 det the,regions
R2837 T4628 T4626 pobj regions,in
R2838 T4629 T4628 prep of,regions
R2839 T4630 T4631 det the,chromosomes
R2840 T4631 T4629 pobj chromosomes,of
R2841 T4632 T4631 nummod three,chromosomes
R2842 T4633 T4631 acl associated,chromosomes
R2843 T4634 T4633 prep with,associated
R2844 T4635 T4636 det the,phenotype
R2845 T4636 T4634 pobj phenotype,with
R2846 T4637 T4636 amod milder,phenotype
R2847 T4638 T4613 punct .,are
R2848 T4640 T4641 expl There,are
R2849 T4642 T4643 amod several,genes
R2850 T4643 T4641 attr genes,are
R2851 T4644 T4643 compound potassium,genes
R2852 T4645 T4643 compound channel,genes
R2853 T4646 T4643 prep in,genes
R2854 T4647 T4648 det the,regions
R2855 T4648 T4646 pobj regions,in
R2856 T4649 T4648 amod identified,regions
R2857 T4650 T4651 dep that,affect
R2858 T4651 T4643 relcl affect,genes
R2859 T4652 T4651 advmod potentially,affect
R2860 T4653 T4651 aux could,affect
R2861 T4654 T4655 nmod electrolyte,transport
R2862 T4655 T4651 dobj transport,affect
R2863 T4656 T4654 cc and,electrolyte
R2864 T4657 T4654 conj fluid,electrolyte
R2865 T4658 T4643 punct : ,genes
R2866 T4659 T4643 appos Kcnj9,genes
R2867 T4660 T4661 punct (,chr.1
R2868 T4661 T4659 parataxis chr.1,Kcnj9
R2869 T4662 T4661 punct ", ",chr.1
R2870 T4663 T4664 nummod 94.2,cM
R2871 T4664 T4661 npadvmod cM,chr.1
R2872 T4665 T4661 punct ),chr.1
R2873 T4666 T4659 punct ", ",Kcnj9
R2874 T4667 T4659 conj Kcnj10,Kcnj9
R2875 T4668 T4669 punct (,chr.1
R2876 T4669 T4667 parataxis chr.1,Kcnj10
R2877 T4670 T4669 punct ", ",chr.1
R2878 T4671 T4672 nummod 93.5,cM
R2879 T4672 T4669 npadvmod cM,chr.1
R2880 T4673 T4669 punct ),chr.1
R2881 T4674 T4667 punct ", ",Kcnj10
R2882 T4675 T4667 conj Kcnj5,Kcnj10
R2883 T4676 T4677 punct (,cM
R2884 T4677 T4675 parataxis cM,Kcnj5
R2885 T4678 T4677 dep chr.9,cM
R2886 T4679 T4677 punct ", ",cM
R2887 T4680 T4677 nummod 11,cM
R2888 T4681 T4677 punct ),cM
R2889 T4682 T4675 punct ", ",Kcnj5
R2890 T4683 T4675 cc and,Kcnj5
R2891 T4684 T4675 conj Kcnc2,Kcnj5
R2892 T4685 T4686 punct (,chr.10
R2893 T4686 T4684 parataxis chr.10,Kcnc2
R2894 T4687 T4686 punct ", ",chr.10
R2895 T4688 T4689 nummod 62,cM
R2896 T4689 T4686 npadvmod cM,chr.10
R2897 T4690 T4686 punct ),chr.10
R2898 T4691 T4641 punct .,are
R2899 T4693 T4694 det All,names
R2900 T4694 T4696 nsubj names,are
R2901 T4695 T4694 compound gene,names
R2902 T4697 T4696 prep from,are
R2903 T4698 T4699 det the,website
R2904 T4699 T4697 pobj website,from
R2905 T4700 T4701 compound Mouse,Informatics
R2906 T4701 T4699 compound Informatics,website
R2907 T4702 T4701 compound Genome,Informatics
R2908 T4703 T4696 punct .,are
R2784 T4562 T4563 nmod B,e
R2785 T4570 T4569 det the,s
R2786 T4573 T4572 nsubjpass p,a
R2787 T4575 T4576 mark c,was
R2788 T4576 T4581 advcl was,looked
R2789 T4577 T4576 nsubj ing,was
R2790 T4578 T4577 prep of,ing
R2791 T4579 T4578 pobj markers,of
R2792 T4580 T4579 acl used,markers
R2793 T4582 T4583 quantmod about,12
R2794 T4583 T4584 nummod 12,cM
R2795 T4584 T4576 attr cM,was
R2796 T4585 T4581 punct ", ",looked
R2797 T4586 T4581 nsubjpass genes,looked
R2798 T4587 T4586 prep within,genes
R2799 T4588 T4589 nummod 75,%
R2800 T4589 T4587 pobj %,within
R2801 T4590 T4589 prep of,%
R2802 T4591 T4592 det this,interval
R2803 T4592 T4590 pobj interval,of
R2804 T4593 T4586 prep on,genes
R2805 T4594 T4595 det either,side

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T4120 619-625 SO_EXT:0001026 denotes Genome
T4119 613-618 NCBITaxon:10088 denotes Mouse
T4118 589-593 SO_EXT:0000704 denotes gene
T4117 569-573 GO_SO_EXT:chromosome denotes chr.
T4116 562-567 PR_EXT:000000782 denotes Kcnc2
T4115 543-547 GO_SO_EXT:chromosome denotes chr.
T4114 536-541 PR_EXT:000002005 denotes Kcnj5
T4113 519-523 GO_SO_EXT:chromosome denotes chr.
T4112 511-517 PR_EXT:000001979 denotes Kcnj10
T4111 494-498 GO_SO_EXT:chromosome denotes chr.
T4110 487-492 PR_EXT:000002004 denotes Kcnj9
T4109 470-485 GO:0042044 denotes fluid transport
T4108 470-475 UBERON:0006314 denotes fluid
T4107 392-397 SO_EXT:0000704 denotes genes
T4106 374-391 GO_EXT:0005267 denotes potassium channel
T4105 374-383 CHEBI_EXT:potassium denotes potassium
T4104 306-317 GO_SO_EXT:chromosomal_part_or_position_or_region_or_site denotes chromosomes
T4103 285-295 _FRAGMENT denotes regions of
T4102 269-273 PR_EXT:000001044 denotes CFTR
T4101 213-230 GO_EXT:0005254 denotes chloride channels
T4100 213-221 CHEBI:17996 denotes chloride
T4099 173-183 UBERON:0000160 denotes intestinal
T4098 109-116 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T4097 53-58 SO_EXT:0000704 denotes genes
T4096 23-30 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes markers
T4094 2-3 NCBITaxon:10088 denotes c
T4093 1-2 SO_EXT:0001023 denotes e
T4095 12-13 CHEBI_SO_EXT:molecular_indicator_or_label_or_marker_or_tag denotes s
R2532 T4104 T4103 _lexicallyChainedTo chromosomes,regions of

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T3959 619-625 SO:0001026 denotes Genome
T3958 613-618 NCBITaxon:10088 denotes Mouse
T3957 589-593 SO:0000704 denotes gene
T3956 562-567 PR:000000782 denotes Kcnc2
T3955 536-541 PR:000002005 denotes Kcnj5
T3954 511-517 PR:000001979 denotes Kcnj10
T3953 487-492 PR:000002004 denotes Kcnj9
T3952 470-485 GO:0042044 denotes fluid transport
T3951 470-475 UBERON:0006314 denotes fluid
T3950 392-397 SO:0000704 denotes genes
T3949 269-273 PR:000001044 denotes CFTR
T3948 213-221 CHEBI:17996 denotes chloride
T3947 173-183 UBERON:0000160 denotes intestinal
T3946 53-58 SO:0000704 denotes genes
T3945 2-3 NCBITaxon:10088 denotes c
T3944 1-2 SO:0001023 denotes e