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PMC:1140370 / 35353-35968 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T11122 0-2 IN denotes On
T11123 82-90 VBD denotes restored
T11124 3-4 NN denotes Y
T11125 5-9 NN denotes fork
T11126 4-5 HYPH denotes -
T11127 10-20 NNS denotes substrates
T11128 20-22 , denotes ,
T11129 22-30 NN denotes increase
T11130 31-33 IN denotes of
T11131 34-36 NN denotes AT
T11132 42-47 NNS denotes pairs
T11133 37-41 NN denotes base
T11134 48-50 IN denotes in
T11135 51-54 DT denotes the
T11136 55-61 NN denotes duplex
T11137 62-63 -LRB- denotes (
T11138 66-73 NNS denotes repeats
T11139 63-65 CD denotes 10
T11140 74-76 IN denotes of
T11141 77-80 NN denotes CTT
T11142 80-81 -RRB- denotes )
T11143 91-94 DT denotes the
T11144 95-104 NN denotes unwinding
T11145 104-105 . denotes .
T11146 105-293 sentence denotes These results indicate either that thymine residues are required on the duplex DNA for continuous unwinding, or that Mcm4/6/7 is simply not efficient enough to unwind the stable GC pairs.
T11147 106-111 DT denotes These
T11148 112-119 NNS denotes results
T11149 120-128 VBP denotes indicate
T11150 129-135 CC denotes either
T11151 162-170 VBN denotes required
T11152 136-140 IN denotes that
T11153 141-148 NN denotes thymine
T11154 149-157 NNS denotes residues
T11155 158-161 VBP denotes are
T11156 171-173 IN denotes on
T11157 174-177 DT denotes the
T11158 185-188 NN denotes DNA
T11159 178-184 NN denotes duplex
T11160 189-192 IN denotes for
T11161 193-203 JJ denotes continuous
T11162 204-213 NN denotes unwinding
T11163 213-215 , denotes ,
T11164 215-217 CC denotes or
T11165 218-222 IN denotes that
T11166 232-234 VBZ denotes is
T11167 223-227 NN denotes Mcm4
T11168 227-228 HYPH denotes /
T11169 228-229 CD denotes 6
T11170 229-230 HYPH denotes /
T11171 230-231 CD denotes 7
T11172 235-241 RB denotes simply
T11173 242-245 RB denotes not
T11174 246-255 JJ denotes efficient
T11175 256-262 RB denotes enough
T11176 263-265 TO denotes to
T11177 266-272 VB denotes unwind
T11178 273-276 DT denotes the
T11179 287-292 NNS denotes pairs
T11180 277-283 JJ denotes stable
T11181 284-286 NN denotes GC
T11182 292-293 . denotes .
T11183 293-615 sentence denotes Replacement of the central guanosine with inosine in the CGG repeat duplex DNA resulted in displacement (Figure 8E) (31), suggesting that the continuous presence of AT base pair may not be essential for the Mcm helicase function and that the thermostability of GC base pairs is inhibitory for helicase action of Mcm4/6/7.
T11184 294-305 NN denotes Replacement
T11185 373-381 VBD denotes resulted
T11186 306-308 IN denotes of
T11187 309-312 DT denotes the
T11188 321-330 NN denotes guanosine
T11189 313-320 JJ denotes central
T11190 331-335 IN denotes with
T11191 336-343 NN denotes inosine
T11192 344-346 IN denotes in
T11193 347-350 DT denotes the
T11194 369-372 NN denotes DNA
T11195 351-354 NN denotes CGG
T11196 355-361 NN denotes repeat
T11197 362-368 NN denotes duplex
T11198 382-384 IN denotes in
T11199 385-397 NN denotes displacement
T11200 398-399 -LRB- denotes (
T11201 406-408 NN denotes 8E
T11202 399-405 NN denotes Figure
T11203 408-409 -RRB- denotes )
T11204 410-411 -LRB- denotes (
T11205 411-413 CD denotes 31
T11206 413-414 -RRB- denotes )
T11207 414-416 , denotes ,
T11208 416-426 VBG denotes suggesting
T11209 427-431 IN denotes that
T11210 480-482 VB denotes be
T11211 432-435 DT denotes the
T11212 447-455 NN denotes presence
T11213 436-446 JJ denotes continuous
T11214 456-458 IN denotes of
T11215 459-461 NN denotes AT
T11216 467-471 NN denotes pair
T11217 462-466 NN denotes base
T11218 472-475 MD denotes may
T11219 476-479 RB denotes not
T11220 483-492 JJ denotes essential
T11221 493-496 IN denotes for
T11222 497-500 DT denotes the
T11223 514-522 NN denotes function
T11224 501-504 NN denotes Mcm
T11225 505-513 NN denotes helicase
T11226 523-526 CC denotes and
T11227 527-531 IN denotes that
T11228 569-571 VBZ denotes is
T11229 532-535 DT denotes the
T11230 536-551 NN denotes thermostability
T11231 552-554 IN denotes of
T11232 555-557 NN denotes GC
T11233 563-568 NNS denotes pairs
T11234 558-562 NN denotes base
T11235 572-582 JJ denotes inhibitory
T11236 583-586 IN denotes for
T11237 587-595 NN denotes helicase
T11238 596-602 NN denotes action
T11239 603-605 IN denotes of
T11240 606-610 NN denotes Mcm4
T11241 610-611 HYPH denotes /
T11242 611-612 CD denotes 6
T11243 612-613 HYPH denotes /
T11244 613-614 CD denotes 7
T11245 614-615 . denotes .
R7316 T11122 T11123 prep On,restored
R7317 T11124 T11125 compound Y,fork
R7318 T11125 T11127 compound fork,substrates
R7319 T11126 T11125 punct -,fork
R7320 T11127 T11122 pobj substrates,On
R7321 T11128 T11123 punct ", ",restored
R7322 T11129 T11123 nsubj increase,restored
R7323 T11130 T11129 prep of,increase
R7324 T11131 T11132 compound AT,pairs
R7325 T11132 T11130 pobj pairs,of
R7326 T11133 T11132 compound base,pairs
R7327 T11134 T11129 prep in,increase
R7328 T11135 T11136 det the,duplex
R7329 T11136 T11134 pobj duplex,in
R7330 T11137 T11138 punct (,repeats
R7331 T11138 T11136 parataxis repeats,duplex
R7332 T11139 T11138 nummod 10,repeats
R7333 T11140 T11138 prep of,repeats
R7334 T11141 T11140 pobj CTT,of
R7335 T11142 T11138 punct ),repeats
R7336 T11143 T11144 det the,unwinding
R7337 T11144 T11123 dobj unwinding,restored
R7338 T11145 T11123 punct .,restored
R7339 T11147 T11148 det These,results
R7340 T11148 T11149 nsubj results,indicate
R7341 T11150 T11151 preconj either,required
R7342 T11151 T11149 advcl required,indicate
R7343 T11152 T11151 mark that,required
R7344 T11153 T11154 compound thymine,residues
R7345 T11154 T11151 nsubjpass residues,required
R7346 T11155 T11151 auxpass are,required
R7347 T11156 T11151 prep on,required
R7348 T11157 T11158 det the,DNA
R7349 T11158 T11156 pobj DNA,on
R7350 T11159 T11158 compound duplex,DNA
R7351 T11160 T11151 prep for,required
R7352 T11161 T11162 amod continuous,unwinding
R7353 T11162 T11160 pobj unwinding,for
R7354 T11163 T11151 punct ", ",required
R7355 T11164 T11151 cc or,required
R7356 T11165 T11166 mark that,is
R7357 T11166 T11151 conj is,required
R7358 T11167 T11166 nsubj Mcm4,is
R7359 T11168 T11167 punct /,Mcm4
R7360 T11169 T11167 nummod 6,Mcm4
R7361 T11170 T11167 punct /,Mcm4
R7362 T11171 T11167 nummod 7,Mcm4
R7363 T11172 T11166 advmod simply,is
R7364 T11173 T11166 neg not,is
R7365 T11174 T11166 acomp efficient,is
R7366 T11175 T11174 advmod enough,efficient
R7367 T11176 T11177 aux to,unwind
R7368 T11177 T11174 xcomp unwind,efficient
R7369 T11178 T11179 det the,pairs
R7370 T11179 T11177 dobj pairs,unwind
R7371 T11180 T11179 amod stable,pairs
R7372 T11181 T11179 compound GC,pairs
R7373 T11182 T11149 punct .,indicate
R7374 T11184 T11185 nsubj Replacement,resulted
R7375 T11186 T11184 prep of,Replacement
R7376 T11187 T11188 det the,guanosine
R7377 T11188 T11186 pobj guanosine,of
R7378 T11189 T11188 amod central,guanosine
R7379 T11190 T11184 prep with,Replacement
R7380 T11191 T11190 pobj inosine,with
R7381 T11192 T11184 prep in,Replacement
R7382 T11193 T11194 det the,DNA
R7383 T11194 T11192 pobj DNA,in
R7384 T11195 T11196 compound CGG,repeat
R7385 T11196 T11194 compound repeat,DNA
R7386 T11197 T11194 compound duplex,DNA
R7387 T11198 T11185 prep in,resulted
R7388 T11199 T11198 pobj displacement,in
R7389 T11200 T11201 punct (,8E
R7390 T11201 T11185 parataxis 8E,resulted
R7391 T11202 T11201 compound Figure,8E
R7392 T11203 T11201 punct ),8E
R7393 T11204 T11205 punct (,31
R7394 T11205 T11185 parataxis 31,resulted
R7395 T11206 T11205 punct ),31
R7396 T11207 T11185 punct ", ",resulted
R7397 T11208 T11185 advcl suggesting,resulted
R7398 T11209 T11210 mark that,be
R7399 T11210 T11208 advcl be,suggesting
R7400 T11211 T11212 det the,presence
R7401 T11212 T11210 nsubj presence,be
R7402 T11213 T11212 amod continuous,presence
R7403 T11214 T11212 prep of,presence
R7404 T11215 T11216 compound AT,pair
R7405 T11216 T11214 pobj pair,of
R7406 T11217 T11216 compound base,pair
R7407 T11218 T11210 aux may,be
R7408 T11219 T11210 neg not,be
R7409 T11220 T11210 acomp essential,be
R7410 T11221 T11220 prep for,essential
R7411 T11222 T11223 det the,function
R7412 T11223 T11221 pobj function,for
R7413 T11224 T11225 compound Mcm,helicase
R7414 T11225 T11223 compound helicase,function
R7415 T11226 T11210 cc and,be
R7416 T11227 T11228 mark that,is
R7417 T11228 T11210 conj is,be
R7418 T11229 T11230 det the,thermostability
R7419 T11230 T11228 nsubj thermostability,is
R7420 T11231 T11230 prep of,thermostability
R7421 T11232 T11233 compound GC,pairs
R7422 T11233 T11231 pobj pairs,of
R7423 T11234 T11233 compound base,pairs
R7424 T11235 T11228 acomp inhibitory,is
R7425 T11236 T11235 prep for,inhibitory
R7426 T11237 T11238 compound helicase,action
R7427 T11238 T11236 pobj action,for
R7428 T11239 T11238 prep of,action
R7429 T11240 T11239 pobj Mcm4,of
R7430 T11241 T11240 punct /,Mcm4
R7431 T11242 T11240 nummod 6,Mcm4
R7432 T11243 T11240 punct /,Mcm4
R7433 T11244 T11240 nummod 7,Mcm4
R7434 T11245 T11185 punct .,resulted

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10754 5-9 GO:0005657 denotes fork
T10755 37-41 CHEBI_SO_EXT:base denotes base
T10756 37-47 SO_EXT:0000028 denotes base pairs
T10757 66-73 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T10758 141-148 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes thymine
T10759 149-157 CHEBI_EXT:residue denotes residues
T10760 178-188 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T10761 223-227 PR_EXT:000010246 denotes Mcm4
T10762 223-231 GO:0097373 denotes Mcm4/6/7
T10763 287-292 SO_EXT:0000028 denotes pairs
T10764 294-305 SO_EXT:sequence_substitution_entity_or_process denotes Replacement
T10765 321-330 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes guanosine
T10766 336-343 CHEBI_SO_EXT:inosine denotes inosine
T10767 355-361 SO_EXT:sequence_repeat_unit_or_region denotes repeat
T10768 362-372 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T10769 462-466 CHEBI_SO_EXT:base denotes base
T10770 462-471 SO_EXT:0000028 denotes base pair
T10771 501-504 GO:0042555 denotes Mcm
T10772 505-513 GO_EXT:0004386 denotes helicase
T10773 558-562 CHEBI_SO_EXT:base denotes base
T10774 558-568 SO_EXT:0000028 denotes base pairs
T10775 587-595 GO_EXT:0004386 denotes helicase
T10776 606-610 PR_EXT:000010246 denotes Mcm4
T10777 606-614 GO:0097373 denotes Mcm4/6/7

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10650 5-9 GO:0005657 denotes fork
T10651 37-47 SO:0000028 denotes base pairs
T10652 178-184 SO:0000985 denotes duplex
T10653 223-227 PR:000010246 denotes Mcm4
T10654 223-231 GO:0097373 denotes Mcm4/6/7
T10655 287-292 SO:0000028 denotes pairs
T10656 362-368 SO:0000985 denotes duplex
T10657 462-471 SO:0000028 denotes base pair
T10658 501-504 GO:0042555 denotes Mcm
T10659 558-568 SO:0000028 denotes base pairs
T10660 606-610 PR:000010246 denotes Mcm4
T10661 606-614 GO:0097373 denotes Mcm4/6/7

2_test

Id Subject Object Predicate Lexical cue
15917436-4080553-76775545 411-413 4080553 denotes 31