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PMC:1140370 / 27215-28058 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T8325 0-2 IN denotes In
T8326 52-60 VBD denotes designed
T8327 3-8 NN denotes order
T8328 9-11 TO denotes to
T8329 12-23 VB denotes distinguish
T8330 24-29 DT denotes these
T8331 34-47 NNS denotes possibilities
T8332 30-33 CD denotes two
T8333 47-49 , denotes ,
T8334 49-51 PRP denotes we
T8335 61-62 DT denotes a
T8336 74-83 NN denotes substrate
T8337 63-66 JJ denotes new
T8338 67-68 NN denotes T
T8339 69-73 NN denotes fork
T8340 68-69 HYPH denotes -
T8341 84-94 VBG denotes containing
T8342 95-102 NN denotes inosine
T8343 107-114 NN denotes residue
T8344 103-104 -LRB- denotes (
T8345 104-105 NN denotes I
T8346 105-106 -RRB- denotes )
T8347 115-122 RB denotes instead
T8348 123-125 IN denotes of
T8349 126-135 NN denotes guanosine
T8350 136-143 NN denotes residue
T8351 143-144 . denotes .
T8352 144-317 sentence denotes The thermal stability of the I:C base pair is lower than that of the G:C base pair in duplex DNA due to loss of one hydrogen bond and is even lower than A:T base pair (31).
T8353 145-148 DT denotes The
T8354 157-166 NN denotes stability
T8355 149-156 JJ denotes thermal
T8356 188-190 VBZ denotes is
T8357 167-169 IN denotes of
T8358 170-173 DT denotes the
T8359 183-187 NN denotes pair
T8360 174-175 NN denotes I
T8361 176-177 NN denotes C
T8362 175-176 : denotes :
T8363 178-182 NN denotes base
T8364 191-196 JJR denotes lower
T8365 197-201 IN denotes than
T8366 202-206 DT denotes that
T8367 207-209 IN denotes of
T8368 210-213 DT denotes the
T8369 223-227 NN denotes pair
T8370 214-215 NN denotes G
T8371 216-217 NN denotes C
T8372 215-216 : denotes :
T8373 218-222 NN denotes base
T8374 228-230 IN denotes in
T8375 231-237 NN denotes duplex
T8376 238-241 NN denotes DNA
T8377 242-245 IN denotes due
T8378 246-248 IN denotes to
T8379 249-253 NN denotes loss
T8380 254-256 IN denotes of
T8381 257-260 CD denotes one
T8382 270-274 NN denotes bond
T8383 261-269 NN denotes hydrogen
T8384 275-278 CC denotes and
T8385 279-281 VBZ denotes is
T8386 282-286 RB denotes even
T8387 287-292 JJR denotes lower
T8388 293-297 IN denotes than
T8389 298-299 NN denotes A
T8390 300-301 NN denotes T
T8391 299-300 : denotes :
T8392 307-311 NN denotes pair
T8393 302-306 NN denotes base
T8394 312-313 -LRB- denotes (
T8395 313-315 CD denotes 31
T8396 315-316 -RRB- denotes )
T8397 316-317 . denotes .
T8398 317-448 sentence denotes We constructed the T-tailed fork substrates containing the (GCC:CGG)10, (GCC:CIG)10 or (GAA:CTT)10 duplex DNA segment (Figure 8E).
T8399 318-320 PRP denotes We
T8400 321-332 VBD denotes constructed
T8401 333-336 DT denotes the
T8402 351-361 NNS denotes substrates
T8403 337-338 NN denotes T
T8404 339-345 VBN denotes tailed
T8405 338-339 HYPH denotes -
T8406 346-350 NN denotes fork
T8407 362-372 VBG denotes containing
T8408 373-376 DT denotes the
T8409 428-435 NN denotes segment
T8410 377-378 -LRB- denotes (
T8411 382-385 NN denotes CGG
T8412 378-381 NN denotes GCC
T8413 381-382 : denotes :
T8414 385-386 -RRB- denotes )
T8415 386-388 CD denotes 10
T8416 388-390 , denotes ,
T8417 390-391 -LRB- denotes (
T8418 395-398 NN denotes CIG
T8419 391-394 NN denotes GCC
T8420 394-395 : denotes :
T8421 398-399 -RRB- denotes )
T8422 399-401 CD denotes 10
T8423 402-404 CC denotes or
T8424 405-406 -LRB- denotes (
T8425 410-413 NN denotes CTT
T8426 406-409 NN denotes GAA
T8427 409-410 : denotes :
T8428 413-414 -RRB- denotes )
T8429 414-416 CD denotes 10
T8430 417-423 NN denotes duplex
T8431 424-427 NN denotes DNA
T8432 436-437 -LRB- denotes (
T8433 444-446 NN denotes 8E
T8434 437-443 NN denotes Figure
T8435 446-447 -RRB- denotes )
T8436 447-448 . denotes .
T8437 448-594 sentence denotes Mcm4/6/7 hardly displaced the 31 nt long duplex of GCC:CGG repeats, whereas the T-fork/(GAA:CTT)10 was displaced efficiently, as described above.
T8438 449-453 NN denotes Mcm4
T8439 465-474 VBD denotes displaced
T8440 453-454 HYPH denotes /
T8441 454-455 CD denotes 6
T8442 455-456 HYPH denotes /
T8443 456-457 CD denotes 7
T8444 458-464 RB denotes hardly
T8445 475-478 DT denotes the
T8446 490-496 NN denotes duplex
T8447 479-481 CD denotes 31
T8448 482-484 NN denotes nt
T8449 485-489 JJ denotes long
T8450 497-499 IN denotes of
T8451 500-503 NN denotes GCC
T8452 504-507 NN denotes CGG
T8453 503-504 : denotes :
T8454 508-515 NNS denotes repeats
T8455 515-517 , denotes ,
T8456 517-524 IN denotes whereas
T8457 552-561 VBN denotes displaced
T8458 525-528 DT denotes the
T8459 541-544 NN denotes CTT
T8460 529-530 NN denotes T
T8461 531-535 NN denotes fork
T8462 530-531 HYPH denotes -
T8463 535-536 HYPH denotes /
T8464 536-537 -LRB- denotes (
T8465 537-540 NN denotes GAA
T8466 540-541 : denotes :
T8467 544-545 -RRB- denotes )
T8468 545-547 CD denotes 10
T8469 548-551 VBD denotes was
T8470 562-573 RB denotes efficiently
T8471 573-575 , denotes ,
T8472 575-577 IN denotes as
T8473 578-587 VBN denotes described
T8474 588-593 RB denotes above
T8475 593-594 . denotes .
T8476 594-843 sentence denotes T-fork/(GCC:CIG)10 was displaced with efficiency much greater than that of T-fork/(GCC:CGG)10, indicating that the thermostability of the duplex segment, not the lack of AT base pair, is responsible for inability of Mcm4/6/7 to displace the duplex.
T8477 595-596 NN denotes T
T8478 597-601 NN denotes fork
T8479 596-597 HYPH denotes -
T8480 607-610 NN denotes CIG
T8481 601-602 HYPH denotes /
T8482 602-603 -LRB- denotes (
T8483 603-606 NN denotes GCC
T8484 606-607 : denotes :
T8485 618-627 VBN denotes displaced
T8486 610-611 -RRB- denotes )
T8487 611-613 CD denotes 10
T8488 614-617 VBD denotes was
T8489 628-632 IN denotes with
T8490 633-643 NN denotes efficiency
T8491 644-648 RB denotes much
T8492 649-656 JJR denotes greater
T8493 657-661 IN denotes than
T8494 662-666 DT denotes that
T8495 667-669 IN denotes of
T8496 670-671 NN denotes T
T8497 672-676 NN denotes fork
T8498 671-672 HYPH denotes -
T8499 682-685 NN denotes CGG
T8500 676-677 HYPH denotes /
T8501 677-678 -LRB- denotes (
T8502 678-681 NN denotes GCC
T8503 681-682 : denotes :
T8504 685-686 -RRB- denotes )
T8505 686-688 CD denotes 10
T8506 688-690 , denotes ,
T8507 690-700 VBG denotes indicating
T8508 701-705 IN denotes that
T8509 779-781 VBZ denotes is
T8510 706-709 DT denotes the
T8511 710-725 NN denotes thermostability
T8512 726-728 IN denotes of
T8513 729-732 DT denotes the
T8514 740-747 NN denotes segment
T8515 733-739 NN denotes duplex
T8516 747-749 , denotes ,
T8517 749-752 CC denotes not
T8518 753-756 DT denotes the
T8519 757-761 NN denotes lack
T8520 762-764 IN denotes of
T8521 765-767 NN denotes AT
T8522 773-777 NN denotes pair
T8523 768-772 NN denotes base
T8524 777-779 , denotes ,
T8525 782-793 JJ denotes responsible
T8526 794-797 IN denotes for
T8527 798-807 NN denotes inability
T8528 808-810 IN denotes of
T8529 811-815 NN denotes Mcm4
T8530 815-816 HYPH denotes /
T8531 816-817 CD denotes 6
T8532 817-818 HYPH denotes /
T8533 818-819 CD denotes 7
T8534 820-822 TO denotes to
T8535 823-831 VB denotes displace
T8536 832-835 DT denotes the
T8537 836-842 NN denotes duplex
T8538 842-843 . denotes .
R5691 T8325 T8326 prep In,designed
R5692 T8327 T8325 pobj order,In
R5693 T8328 T8329 aux to,distinguish
R5694 T8329 T8327 acl distinguish,order
R5695 T8330 T8331 det these,possibilities
R5696 T8331 T8329 dobj possibilities,distinguish
R5697 T8332 T8331 nummod two,possibilities
R5698 T8333 T8326 punct ", ",designed
R5699 T8334 T8326 nsubj we,designed
R5700 T8335 T8336 det a,substrate
R5701 T8336 T8326 dobj substrate,designed
R5702 T8337 T8336 amod new,substrate
R5703 T8338 T8339 compound T,fork
R5704 T8339 T8336 compound fork,substrate
R5705 T8340 T8339 punct -,fork
R5706 T8341 T8336 acl containing,substrate
R5707 T8342 T8343 nmod inosine,residue
R5708 T8343 T8341 dobj residue,containing
R5709 T8344 T8342 punct (,inosine
R5710 T8345 T8342 appos I,inosine
R5711 T8346 T8343 punct ),residue
R5712 T8347 T8348 advmod instead,of
R5713 T8348 T8343 prep of,residue
R5714 T8349 T8350 compound guanosine,residue
R5715 T8350 T8348 pobj residue,of
R5716 T8351 T8326 punct .,designed
R5717 T8353 T8354 det The,stability
R5718 T8354 T8356 nsubj stability,is
R5719 T8355 T8354 amod thermal,stability
R5720 T8357 T8354 prep of,stability
R5721 T8358 T8359 det the,pair
R5722 T8359 T8357 pobj pair,of
R5723 T8360 T8361 nmod I,C
R5724 T8361 T8359 compound C,pair
R5725 T8362 T8361 punct :,C
R5726 T8363 T8359 compound base,pair
R5727 T8364 T8356 acomp lower,is
R5728 T8365 T8364 prep than,lower
R5729 T8366 T8365 pobj that,than
R5730 T8367 T8366 prep of,that
R5731 T8368 T8369 det the,pair
R5732 T8369 T8367 pobj pair,of
R5733 T8370 T8371 nmod G,C
R5734 T8371 T8369 compound C,pair
R5735 T8372 T8371 punct :,C
R5736 T8373 T8369 compound base,pair
R5737 T8374 T8356 prep in,is
R5738 T8375 T8376 compound duplex,DNA
R5739 T8376 T8374 pobj DNA,in
R5740 T8377 T8356 prep due,is
R5741 T8378 T8377 pcomp to,due
R5742 T8379 T8377 pobj loss,due
R5743 T8380 T8379 prep of,loss
R5744 T8381 T8382 nummod one,bond
R5745 T8382 T8380 pobj bond,of
R5746 T8383 T8382 compound hydrogen,bond
R5747 T8384 T8356 cc and,is
R5748 T8385 T8356 conj is,is
R5749 T8386 T8387 advmod even,lower
R5750 T8387 T8385 acomp lower,is
R5751 T8388 T8387 prep than,lower
R5752 T8389 T8390 nmod A,T
R5753 T8390 T8392 compound T,pair
R5754 T8391 T8390 punct :,T
R5755 T8392 T8388 pobj pair,than
R5756 T8393 T8392 compound base,pair
R5757 T8394 T8395 punct (,31
R5758 T8395 T8392 parataxis 31,pair
R5759 T8396 T8395 punct ),31
R5760 T8397 T8356 punct .,is
R5761 T8399 T8400 nsubj We,constructed
R5762 T8401 T8402 det the,substrates
R5763 T8402 T8400 dobj substrates,constructed
R5764 T8403 T8404 npadvmod T,tailed
R5765 T8404 T8402 amod tailed,substrates
R5766 T8405 T8404 punct -,tailed
R5767 T8406 T8402 compound fork,substrates
R5768 T8407 T8402 acl containing,substrates
R5769 T8408 T8409 det the,segment
R5770 T8409 T8407 dobj segment,containing
R5771 T8410 T8411 punct (,CGG
R5772 T8411 T8409 nmod CGG,segment
R5773 T8412 T8411 nmod GCC,CGG
R5774 T8413 T8411 punct :,CGG
R5775 T8414 T8411 punct ),CGG
R5776 T8415 T8411 nummod 10,CGG
R5777 T8416 T8411 punct ", ",CGG
R5778 T8417 T8418 punct (,CIG
R5779 T8418 T8411 conj CIG,CGG
R5780 T8419 T8418 nmod GCC,CIG
R5781 T8420 T8418 punct :,CIG
R5782 T8421 T8418 punct ),CIG
R5783 T8422 T8418 nummod 10,CIG
R5784 T8423 T8418 cc or,CIG
R5785 T8424 T8425 punct (,CTT
R5786 T8425 T8418 conj CTT,CIG
R5787 T8426 T8425 nmod GAA,CTT
R5788 T8427 T8425 punct :,CTT
R5789 T8428 T8425 punct ),CTT
R5790 T8429 T8425 nummod 10,CTT
R5791 T8430 T8409 compound duplex,segment
R5792 T8431 T8409 compound DNA,segment
R5793 T8432 T8433 punct (,8E
R5794 T8433 T8407 parataxis 8E,containing
R5795 T8434 T8433 compound Figure,8E
R5796 T8435 T8433 punct ),8E
R5797 T8436 T8400 punct .,constructed
R5798 T8438 T8439 nsubj Mcm4,displaced
R5799 T8440 T8438 punct /,Mcm4
R5800 T8441 T8438 nummod 6,Mcm4
R5801 T8442 T8438 punct /,Mcm4
R5802 T8443 T8438 nummod 7,Mcm4
R5803 T8444 T8439 advmod hardly,displaced
R5804 T8445 T8446 det the,duplex
R5805 T8446 T8439 dobj duplex,displaced
R5806 T8447 T8448 nummod 31,nt
R5807 T8448 T8449 npadvmod nt,long
R5808 T8449 T8446 amod long,duplex
R5809 T8450 T8446 prep of,duplex
R5810 T8451 T8452 nmod GCC,CGG
R5811 T8452 T8454 compound CGG,repeats
R5812 T8453 T8452 punct :,CGG
R5813 T8454 T8450 pobj repeats,of
R5814 T8455 T8439 punct ", ",displaced
R5815 T8456 T8457 mark whereas,displaced
R5816 T8457 T8439 advcl displaced,displaced
R5817 T8458 T8459 det the,CTT
R5818 T8459 T8457 nsubjpass CTT,displaced
R5819 T8460 T8461 nmod T,fork
R5820 T8461 T8459 nmod fork,CTT
R5821 T8462 T8461 punct -,fork
R5822 T8463 T8459 punct /,CTT
R5823 T8464 T8459 punct (,CTT
R5824 T8465 T8459 nmod GAA,CTT
R5825 T8466 T8459 punct :,CTT
R5826 T8467 T8459 punct ),CTT
R5827 T8468 T8459 nummod 10,CTT
R5828 T8469 T8457 auxpass was,displaced
R5829 T8470 T8457 advmod efficiently,displaced
R5830 T8471 T8457 punct ", ",displaced
R5831 T8472 T8473 mark as,described
R5832 T8473 T8457 advcl described,displaced
R5833 T8474 T8473 advmod above,described
R5834 T8475 T8439 punct .,displaced
R5835 T8477 T8478 nmod T,fork
R5836 T8478 T8480 nmod fork,CIG
R5837 T8479 T8478 punct -,fork
R5838 T8480 T8485 nsubjpass CIG,displaced
R5839 T8481 T8480 punct /,CIG
R5840 T8482 T8480 punct (,CIG
R5841 T8483 T8480 nmod GCC,CIG
R5842 T8484 T8480 punct :,CIG
R5843 T8486 T8480 punct ),CIG
R5844 T8487 T8480 nummod 10,CIG
R5845 T8488 T8485 auxpass was,displaced
R5846 T8489 T8485 prep with,displaced
R5847 T8490 T8489 pobj efficiency,with
R5848 T8491 T8492 advmod much,greater
R5849 T8492 T8490 amod greater,efficiency
R5850 T8493 T8492 prep than,greater
R5851 T8494 T8493 pobj that,than
R5852 T8495 T8494 prep of,that
R5853 T8496 T8497 nmod T,fork
R5854 T8497 T8499 nmod fork,CGG
R5855 T8498 T8497 punct -,fork
R5856 T8499 T8495 pobj CGG,of
R5857 T8500 T8497 punct /,fork
R5858 T8501 T8499 punct (,CGG
R5859 T8502 T8499 nmod GCC,CGG
R5860 T8503 T8499 punct :,CGG
R5861 T8504 T8499 punct ),CGG
R5862 T8505 T8499 nummod 10,CGG
R5863 T8506 T8485 punct ", ",displaced
R5864 T8507 T8485 advcl indicating,displaced
R5865 T8508 T8509 mark that,is
R5866 T8509 T8507 ccomp is,indicating
R5867 T8510 T8511 det the,thermostability
R5868 T8511 T8509 nsubj thermostability,is
R5869 T8512 T8511 prep of,thermostability
R5870 T8513 T8514 det the,segment
R5871 T8514 T8512 pobj segment,of
R5872 T8515 T8514 compound duplex,segment
R5873 T8516 T8511 punct ", ",thermostability
R5874 T8517 T8511 cc not,thermostability
R5875 T8518 T8519 det the,lack
R5876 T8519 T8511 conj lack,thermostability
R5877 T8520 T8519 prep of,lack
R5878 T8521 T8522 compound AT,pair
R5879 T8522 T8520 pobj pair,of
R5880 T8523 T8522 compound base,pair
R5881 T8524 T8509 punct ", ",is
R5882 T8525 T8509 acomp responsible,is
R5883 T8526 T8525 prep for,responsible
R5884 T8527 T8526 pobj inability,for
R5885 T8528 T8527 prep of,inability
R5886 T8529 T8528 pobj Mcm4,of
R5887 T8530 T8529 punct /,Mcm4
R5888 T8531 T8529 nummod 6,Mcm4
R5889 T8532 T8529 punct /,Mcm4
R5890 T8533 T8529 nummod 7,Mcm4
R5891 T8534 T8535 aux to,displace
R5892 T8535 T8527 acl displace,inability
R5893 T8536 T8537 det the,duplex
R5894 T8537 T8535 dobj duplex,displace
R5895 T8538 T8485 punct .,displaced

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T7688 69-73 GO:0005657 denotes fork
T7689 95-102 CHEBI_SO_EXT:inosine denotes inosine
T7690 104-105 CHEBI_SO_EXT:inosine denotes I
T7691 107-114 CHEBI_EXT:residue denotes residue
T7692 126-135 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes guanosine
T7693 136-143 CHEBI_EXT:residue denotes residue
T7694 174-175 CHEBI_SO_EXT:inosine denotes I
T7695 176-177 CHEBI_EXT:cytosine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes C
T7696 178-182 CHEBI_SO_EXT:base denotes base
T7697 178-187 SO_EXT:0000028 denotes base pair
T7698 214-215 CHEBI_EXT:guanine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes G
T7699 216-217 CHEBI_EXT:cytosine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes C
T7700 218-222 CHEBI_SO_EXT:base denotes base
T7701 218-227 SO_EXT:0000028 denotes base pair
T7702 231-241 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T7703 261-269 CHEBI_EXT:hydrogen denotes hydrogen
T7704 298-299 CHEBI_EXT:adenine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes A
T7705 300-301 CHEBI_EXT:thymine_nucleobase_or_nucleoside_or_nucleotide_molecular_entity_or_group denotes T
T7706 302-306 CHEBI_SO_EXT:base denotes base
T7707 302-311 SO_EXT:0000028 denotes base pair
T7708 346-350 GO:0005657 denotes fork
T7709 417-427 CHEBI_SO_EXT:double_stranded_DNA denotes duplex DNA
T7710 449-453 PR_EXT:000010246 denotes Mcm4
T7711 449-457 GO:0097373 denotes Mcm4/6/7
T7712 482-484 CHEBI_SO_EXT:nucleotide denotes nt
T7713 508-515 SO_EXT:sequence_repeat_unit_or_region denotes repeats
T7714 531-535 GO:0005657 denotes fork
T7715 597-601 GO:0005657 denotes fork
T7716 672-676 GO:0005657 denotes fork
T7717 733-739 SO:0000985 denotes duplex
T7718 768-772 CHEBI_SO_EXT:base denotes base
T7719 768-777 SO_EXT:0000028 denotes base pair
T7720 811-815 PR_EXT:000010246 denotes Mcm4
T7721 811-819 GO:0097373 denotes Mcm4/6/7

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T7582 69-73 GO:0005657 denotes fork
T7583 178-187 SO:0000028 denotes base pair
T7584 218-227 SO:0000028 denotes base pair
T7585 231-237 SO:0000985 denotes duplex
T7586 302-311 SO:0000028 denotes base pair
T7587 346-350 GO:0005657 denotes fork
T7588 417-423 SO:0000985 denotes duplex
T7589 449-453 PR:000010246 denotes Mcm4
T7590 449-457 GO:0097373 denotes Mcm4/6/7
T7591 531-535 GO:0005657 denotes fork
T7592 597-601 GO:0005657 denotes fork
T7593 672-676 GO:0005657 denotes fork
T7594 733-739 SO:0000985 denotes duplex
T7595 768-777 SO:0000028 denotes base pair
T7596 811-815 PR:000010246 denotes Mcm4
T7597 811-819 GO:0097373 denotes Mcm4/6/7

2_test

Id Subject Object Predicate Lexical cue
15917436-4080553-76775531 313-315 4080553 denotes 31