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PMC:1140370 / 18424-19199 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T5567 0-2 IN denotes In
T5568 102-109 VBN denotes unwound
T5569 3-11 NN denotes contrast
T5570 11-13 , denotes ,
T5571 13-17 RB denotes only
T5572 22-31 NN denotes substrate
T5573 18-21 DT denotes the
T5574 32-42 VBG denotes containing
T5575 43-44 DT denotes a
T5576 68-72 NN denotes tail
T5577 45-46 CD denotes 3
T5578 46-47 SYM denotes ′
T5579 48-54 JJ denotes single
T5580 55-63 VBN denotes stranded
T5581 54-55 HYPH denotes -
T5582 64-67 NN denotes DNA
T5583 73-74 -LRB- denotes (
T5584 76-80 NN denotes fork
T5585 74-75 NN denotes A
T5586 75-76 HYPH denotes -
T5587 80-81 -LRB- denotes [
T5588 81-82 CD denotes 5
T5589 82-83 SYM denotes ′
T5590 83-84 -RRB- denotes ]
T5591 84-85 -RRB- denotes )
T5592 86-89 VBD denotes was
T5593 90-101 RB denotes efficiently
T5594 110-113 CC denotes and
T5595 114-115 NN denotes A
T5596 116-120 NN denotes fork
T5597 115-116 HYPH denotes -
T5598 151-158 VBN denotes unwound
T5599 120-121 -LRB- denotes [
T5600 121-122 CD denotes 3
T5601 122-123 SYM denotes ′
T5602 123-124 -RRB- denotes ]
T5603 125-127 CC denotes or
T5604 128-129 NN denotes A
T5605 130-134 NN denotes fork
T5606 129-130 HYPH denotes -
T5607 134-135 -LRB- denotes [
T5608 135-136 CD denotes 3
T5609 136-137 SYM denotes ′
T5610 137-138 , denotes ,
T5611 138-139 CD denotes 5
T5612 139-140 SYM denotes ′
T5613 140-141 -RRB- denotes ]
T5614 141-143 , denotes ,
T5615 143-146 VBD denotes was
T5616 147-150 RB denotes not
T5617 159-161 IN denotes by
T5618 162-166 NN denotes Mcm4
T5619 166-167 HYPH denotes /
T5620 167-168 CD denotes 6
T5621 168-169 HYPH denotes /
T5622 169-170 CD denotes 7
T5623 171-172 -LRB- denotes (
T5624 179-181 NN denotes 4B
T5625 172-178 NN denotes Figure
T5626 181-182 -RRB- denotes )
T5627 182-183 . denotes .
T5628 183-360 sentence denotes Absence of helicase actions on A-fork[3′,5′] composed only of duplex regions is expected since double-stranded DNA is not able to activate the ATPase activity of Mcm4/6/7 (10).
T5629 184-191 NN denotes Absence
T5630 264-272 VBN denotes expected
T5631 192-194 IN denotes of
T5632 195-203 NN denotes helicase
T5633 204-211 NNS denotes actions
T5634 212-214 IN denotes on
T5635 215-216 NN denotes A
T5636 217-221 NN denotes fork
T5637 216-217 HYPH denotes -
T5638 221-222 -LRB- denotes [
T5639 222-223 CD denotes 3
T5640 223-224 SYM denotes ′
T5641 224-225 , denotes ,
T5642 225-226 CD denotes 5
T5643 226-227 SYM denotes ′
T5644 227-228 -RRB- denotes ]
T5645 229-237 VBN denotes composed
T5646 238-242 RB denotes only
T5647 243-245 IN denotes of
T5648 246-252 NN denotes duplex
T5649 253-260 NNS denotes regions
T5650 261-263 VBZ denotes is
T5651 273-278 IN denotes since
T5652 299-301 VBZ denotes is
T5653 279-285 JJ denotes double
T5654 286-294 VBN denotes stranded
T5655 285-286 HYPH denotes -
T5656 295-298 NN denotes DNA
T5657 302-305 RB denotes not
T5658 306-310 JJ denotes able
T5659 311-313 TO denotes to
T5660 314-322 VB denotes activate
T5661 323-326 DT denotes the
T5662 334-342 NN denotes activity
T5663 327-333 NN denotes ATPase
T5664 343-345 IN denotes of
T5665 346-350 NN denotes Mcm4
T5666 350-351 HYPH denotes /
T5667 351-352 CD denotes 6
T5668 352-353 HYPH denotes /
T5669 353-354 CD denotes 7
T5670 355-356 -LRB- denotes (
T5671 356-358 CD denotes 10
T5672 358-359 -RRB- denotes )
T5673 359-360 . denotes .
T5674 360-611 sentence denotes In contrast, the PriA, a structure-specific helicase used as a control, binds at the fork junction and unwinds the fork and the nascent lagging strand DNA on A-fork[5′], or unwinds the nascent lagging strand on A-fork[3′,5′], as reported before (25).
T5675 361-363 IN denotes In
T5676 433-438 VBZ denotes binds
T5677 364-372 NN denotes contrast
T5678 372-374 , denotes ,
T5679 374-377 DT denotes the
T5680 378-382 NN denotes PriA
T5681 382-384 , denotes ,
T5682 384-385 DT denotes a
T5683 405-413 NN denotes helicase
T5684 386-395 NN denotes structure
T5685 396-404 JJ denotes specific
T5686 395-396 HYPH denotes -
T5687 414-418 VBN denotes used
T5688 419-421 IN denotes as
T5689 422-423 DT denotes a
T5690 424-431 NN denotes control
T5691 431-433 , denotes ,
T5692 439-441 IN denotes at
T5693 442-445 DT denotes the
T5694 451-459 NN denotes junction
T5695 446-450 NN denotes fork
T5696 460-463 CC denotes and
T5697 464-471 VBZ denotes unwinds
T5698 472-475 DT denotes the
T5699 476-480 NN denotes fork
T5700 481-484 CC denotes and
T5701 485-488 DT denotes the
T5702 512-515 NN denotes DNA
T5703 489-496 JJ denotes nascent
T5704 497-504 VBG denotes lagging
T5705 505-511 NN denotes strand
T5706 516-518 IN denotes on
T5707 519-520 NN denotes A
T5708 521-525 NN denotes fork
T5709 520-521 HYPH denotes -
T5710 525-526 -LRB- denotes [
T5711 526-527 CD denotes 5
T5712 527-528 SYM denotes ′
T5713 528-529 -RRB- denotes ]
T5714 529-531 , denotes ,
T5715 531-533 CC denotes or
T5716 534-541 VBZ denotes unwinds
T5717 542-545 DT denotes the
T5718 562-568 NN denotes strand
T5719 546-553 JJ denotes nascent
T5720 554-561 VBG denotes lagging
T5721 569-571 IN denotes on
T5722 572-573 NN denotes A
T5723 574-578 NN denotes fork
T5724 573-574 HYPH denotes -
T5725 578-579 -LRB- denotes [
T5726 579-580 CD denotes 3
T5727 580-581 SYM denotes ′
T5728 581-582 , denotes ,
T5729 582-583 CD denotes 5
T5730 583-584 SYM denotes ′
T5731 584-585 -RRB- denotes ]
T5732 585-587 , denotes ,
T5733 587-589 IN denotes as
T5734 590-598 VBN denotes reported
T5735 599-605 RB denotes before
T5736 606-607 -LRB- denotes (
T5737 607-609 CD denotes 25
T5738 609-610 -RRB- denotes )
T5739 610-611 . denotes .
T5740 611-775 sentence denotes These results indicate that the Mcm4/6/7 complex binds to single-stranded DNA and that its helicase is activated only in the presence of a single-stranded 3′-tail.
T5741 612-617 DT denotes These
T5742 618-625 NNS denotes results
T5743 626-634 VBP denotes indicate
T5744 635-639 IN denotes that
T5745 661-666 VBZ denotes binds
T5746 640-643 DT denotes the
T5747 653-660 NN denotes complex
T5748 644-648 NN denotes Mcm4
T5749 648-649 HYPH denotes /
T5750 649-650 CD denotes 6
T5751 650-651 HYPH denotes /
T5752 651-652 CD denotes 7
T5753 667-669 IN denotes to
T5754 670-676 JJ denotes single
T5755 677-685 VBN denotes stranded
T5756 676-677 HYPH denotes -
T5757 686-689 NN denotes DNA
T5758 690-693 CC denotes and
T5759 694-698 IN denotes that
T5760 715-724 VBN denotes activated
T5761 699-702 PRP$ denotes its
T5762 703-711 NN denotes helicase
T5763 712-714 VBZ denotes is
T5764 725-729 RB denotes only
T5765 730-732 IN denotes in
T5766 733-736 DT denotes the
T5767 737-745 NN denotes presence
T5768 746-748 IN denotes of
T5769 749-750 DT denotes a
T5770 770-774 NN denotes tail
T5771 751-757 JJ denotes single
T5772 758-766 VBN denotes stranded
T5773 757-758 HYPH denotes -
T5774 767-768 CD denotes 3
T5775 768-769 SYM denotes ′
T5776 769-770 HYPH denotes -
T5777 774-775 . denotes .
R3757 T5567 T5568 prep In,unwound
R3758 T5569 T5567 pobj contrast,In
R3759 T5570 T5568 punct ", ",unwound
R3760 T5571 T5572 advmod only,substrate
R3761 T5572 T5568 nsubjpass substrate,unwound
R3762 T5573 T5572 det the,substrate
R3763 T5574 T5572 acl containing,substrate
R3764 T5575 T5576 det a,tail
R3765 T5576 T5574 dobj tail,containing
R3766 T5577 T5576 nummod 3,tail
R3767 T5578 T5577 punct ′,3
R3768 T5579 T5580 amod single,stranded
R3769 T5580 T5576 amod stranded,tail
R3770 T5581 T5580 punct -,stranded
R3771 T5582 T5576 compound DNA,tail
R3772 T5583 T5584 punct (,fork
R3773 T5584 T5572 appos fork,substrate
R3774 T5585 T5584 compound A,fork
R3775 T5586 T5584 punct -,fork
R3776 T5587 T5584 punct [,fork
R3777 T5588 T5584 nummod 5,fork
R3778 T5589 T5584 punct ′,fork
R3779 T5590 T5568 punct ],unwound
R3780 T5591 T5568 punct ),unwound
R3781 T5592 T5568 auxpass was,unwound
R3782 T5593 T5568 advmod efficiently,unwound
R3783 T5594 T5568 cc and,unwound
R3784 T5595 T5596 compound A,fork
R3785 T5596 T5598 nsubjpass fork,unwound
R3786 T5597 T5596 punct -,fork
R3788 T5599 T5596 punct [,fork
R3789 T5600 T5596 nummod 3,fork
R3790 T5601 T5596 punct ′,fork
R3791 T5602 T5596 punct ],fork
R3792 T5603 T5596 cc or,fork
R3793 T5604 T5605 compound A,fork
R3794 T5605 T5596 conj fork,fork
R3795 T5606 T5605 punct -,fork
R3796 T5607 T5605 punct [,fork
R3797 T5608 T5605 appos 3,fork
R3798 T5609 T5608 punct ′,3
R3799 T5610 T5608 punct ",",3
R3800 T5611 T5608 appos 5,3
R3801 T5612 T5611 punct ′,5
R3802 T5613 T5598 punct ],unwound
R3803 T5614 T5598 punct ", ",unwound
R3804 T5615 T5598 auxpass was,unwound
R3805 T5616 T5598 neg not,unwound
R3806 T5617 T5598 agent by,unwound
R3807 T5618 T5617 pobj Mcm4,by
R3808 T5619 T5618 punct /,Mcm4
R3809 T5620 T5618 nummod 6,Mcm4
R3810 T5621 T5618 punct /,Mcm4
R3811 T5622 T5618 nummod 7,Mcm4
R3812 T5623 T5624 punct (,4B
R3813 T5624 T5598 parataxis 4B,unwound
R3814 T5625 T5624 compound Figure,4B
R3815 T5626 T5624 punct ),4B
R3816 T5627 T5568 punct .,unwound
R3817 T5629 T5630 nsubjpass Absence,expected
R3818 T5631 T5629 prep of,Absence
R3819 T5632 T5633 compound helicase,actions
R3820 T5633 T5631 pobj actions,of
R3821 T5634 T5629 prep on,Absence
R3822 T5635 T5636 compound A,fork
R3823 T5636 T5634 pobj fork,on
R3824 T5637 T5636 punct -,fork
R3825 T5638 T5636 punct [,fork
R3826 T5639 T5636 appos 3,fork
R3827 T5640 T5639 punct ′,3
R3828 T5641 T5639 punct ",",3
R3829 T5642 T5639 appos 5,3
R3830 T5643 T5642 punct ′,5
R3831 T5644 T5636 punct ],fork
R3832 T5645 T5636 acl composed,fork
R3833 T5646 T5647 advmod only,of
R3834 T5647 T5645 prep of,composed
R3835 T5648 T5649 compound duplex,regions
R3836 T5649 T5647 pobj regions,of
R3837 T5650 T5630 auxpass is,expected
R3838 T5651 T5652 mark since,is
R3839 T5652 T5630 advcl is,expected
R3840 T5653 T5654 amod double,stranded
R3841 T5654 T5656 amod stranded,DNA
R3842 T5655 T5654 punct -,stranded
R3843 T5656 T5652 nsubj DNA,is
R3844 T5657 T5652 neg not,is
R3845 T5658 T5652 acomp able,is
R3846 T5659 T5660 aux to,activate
R3847 T5660 T5658 xcomp activate,able
R3848 T5661 T5662 det the,activity
R3849 T5662 T5660 dobj activity,activate
R3850 T5663 T5662 compound ATPase,activity
R3851 T5664 T5662 prep of,activity
R3852 T5665 T5664 pobj Mcm4,of
R3853 T5666 T5665 punct /,Mcm4
R3854 T5667 T5665 nummod 6,Mcm4
R3855 T5668 T5665 punct /,Mcm4
R3856 T5669 T5665 nummod 7,Mcm4
R3857 T5670 T5671 punct (,10
R3858 T5671 T5652 parataxis 10,is
R3859 T5672 T5671 punct ),10
R3860 T5673 T5630 punct .,expected
R3861 T5675 T5676 prep In,binds
R3862 T5677 T5675 pobj contrast,In
R3863 T5678 T5676 punct ", ",binds
R3864 T5679 T5680 det the,PriA
R3865 T5680 T5676 nsubj PriA,binds
R3866 T5681 T5680 punct ", ",PriA
R3867 T5682 T5683 det a,helicase
R3868 T5683 T5680 appos helicase,PriA
R3869 T5684 T5685 npadvmod structure,specific
R3870 T5685 T5683 amod specific,helicase
R3871 T5686 T5685 punct -,specific
R3872 T5687 T5683 acl used,helicase
R3873 T5688 T5687 prep as,used
R3874 T5689 T5690 det a,control
R3875 T5690 T5688 pobj control,as
R3876 T5691 T5676 punct ", ",binds
R3877 T5692 T5676 prep at,binds
R3878 T5693 T5694 det the,junction
R3879 T5694 T5692 pobj junction,at
R3880 T5695 T5694 compound fork,junction
R3881 T5696 T5676 cc and,binds
R3882 T5697 T5676 conj unwinds,binds
R3883 T5698 T5699 det the,fork
R3884 T5699 T5697 dobj fork,unwinds
R3885 T5700 T5699 cc and,fork
R3886 T5701 T5702 det the,DNA
R3887 T5702 T5699 conj DNA,fork
R3888 T5703 T5702 amod nascent,DNA
R3889 T5704 T5702 amod lagging,DNA
R3890 T5705 T5702 compound strand,DNA
R3891 T5706 T5702 prep on,DNA
R3892 T5707 T5708 compound A,fork
R3893 T5708 T5706 pobj fork,on
R3894 T5709 T5708 punct -,fork
R3895 T5710 T5708 punct [,fork
R3896 T5711 T5708 nummod 5,fork
R3897 T5712 T5708 punct ′,fork
R3898 T5713 T5676 punct ],binds
R3899 T5714 T5676 punct ", ",binds
R3900 T5715 T5676 cc or,binds
R3901 T5716 T5676 conj unwinds,binds
R3902 T5717 T5718 det the,strand
R3903 T5718 T5716 dobj strand,unwinds
R3904 T5719 T5718 amod nascent,strand
R3905 T5720 T5718 amod lagging,strand
R3906 T5721 T5716 prep on,unwinds
R3907 T5722 T5723 compound A,fork
R3908 T5723 T5721 pobj fork,on
R3909 T5724 T5723 punct -,fork
R3910 T5725 T5723 punct [,fork
R3911 T5726 T5723 appos 3,fork
R3912 T5727 T5726 punct ′,3
R3913 T5728 T5726 punct ",",3
R3914 T5729 T5726 appos 5,3
R3915 T5730 T5729 punct ′,5
R3916 T5731 T5676 punct ],binds
R3917 T5732 T5676 punct ", ",binds
R3918 T5733 T5734 mark as,reported
R3919 T5734 T5676 advcl reported,binds
R3920 T5735 T5734 advmod before,reported
R3921 T5736 T5737 punct (,25
R3922 T5737 T5734 parataxis 25,reported
R3923 T5738 T5737 punct ),25
R3924 T5739 T5676 punct .,binds
R3925 T5741 T5742 det These,results
R3926 T5742 T5743 nsubj results,indicate
R3927 T5744 T5745 mark that,binds
R3928 T5745 T5743 advcl binds,indicate
R3929 T5746 T5747 det the,complex
R3930 T5747 T5745 nsubj complex,binds
R3931 T5748 T5747 nmod Mcm4,complex
R3932 T5749 T5748 punct /,Mcm4
R3933 T5750 T5748 nummod 6,Mcm4
R3934 T5751 T5748 punct /,Mcm4
R3935 T5752 T5748 nummod 7,Mcm4
R3936 T5753 T5745 prep to,binds
R3937 T5754 T5755 amod single,stranded
R3938 T5755 T5757 amod stranded,DNA
R3939 T5756 T5755 punct -,stranded
R3940 T5757 T5753 pobj DNA,to
R3941 T5758 T5745 cc and,binds
R3942 T5759 T5760 mark that,activated
R3943 T5760 T5745 conj activated,binds
R3944 T5761 T5762 poss its,helicase
R3945 T5762 T5760 nsubjpass helicase,activated
R3946 T5763 T5760 auxpass is,activated
R3947 T5764 T5765 advmod only,in
R3948 T5765 T5760 prep in,activated
R3949 T5766 T5767 det the,presence
R3950 T5767 T5765 pobj presence,in
R3951 T5768 T5767 prep of,presence
R3952 T5769 T5770 det a,tail
R3953 T5770 T5768 pobj tail,of
R3954 T5771 T5772 amod single,stranded
R3955 T5772 T5770 amod stranded,tail
R3956 T5773 T5772 punct -,stranded
R3957 T5774 T5770 nummod 3,tail
R3958 T5775 T5774 punct ′,3
R3959 T5776 T5770 punct -,tail
R3960 T5777 T5743 punct .,indicate
R3787 T5598 T5568 conj unwound,unwound

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5233 48-67 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T5234 76-80 GO:0005657 denotes fork
T5235 116-120 GO:0005657 denotes fork
T5236 130-134 GO:0005657 denotes fork
T5237 162-166 PR_EXT:000010246 denotes Mcm4
T5238 162-170 GO:0097373 denotes Mcm4/6/7
T5239 195-203 GO_EXT:0004386 denotes helicase
T5240 217-221 GO:0005657 denotes fork
T5241 246-252 SO:0000985 denotes duplex
T5242 279-298 CHEBI_SO_EXT:double_stranded_DNA denotes double-stranded DNA
T5243 327-333 GO_EXT:0016887 denotes ATPase
T5244 346-350 PR_EXT:000010246 denotes Mcm4
T5245 346-354 GO:0097373 denotes Mcm4/6/7
T5246 378-382 PR_EXT:000023591 denotes PriA
T5247 405-413 GO_EXT:0004386 denotes helicase
T5248 433-438 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T5249 446-450 GO:0005657 denotes fork
T5250 476-480 GO:0005657 denotes fork
T5251 512-515 CHEBI_SO_EXT:DNA denotes DNA
T5252 521-525 GO:0005657 denotes fork
T5253 574-578 GO:0005657 denotes fork
T5254 644-648 PR_EXT:000010246 denotes Mcm4
T5255 644-660 GO:0097373 denotes Mcm4/6/7 complex
T5256 661-666 CHEMINF_GO_EXT:chemical_binding_or_bond_formation denotes binds
T5257 670-689 CHEBI_SO_EXT:single_stranded_DNA denotes single-stranded DNA
T5258 703-711 GO_EXT:0004386 denotes helicase
T5259 751-766 SO:0000984 denotes single-stranded

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5170 48-63 SO:0000984 denotes single-stranded
T5171 76-80 GO:0005657 denotes fork
T5172 116-120 GO:0005657 denotes fork
T5173 130-134 GO:0005657 denotes fork
T5174 162-166 PR:000010246 denotes Mcm4
T5175 162-170 GO:0097373 denotes Mcm4/6/7
T5176 217-221 GO:0005657 denotes fork
T5177 246-252 SO:0000985 denotes duplex
T5178 279-294 SO:0000985 denotes double-stranded
T5179 346-350 PR:000010246 denotes Mcm4
T5180 346-354 GO:0097373 denotes Mcm4/6/7
T5181 378-382 PR:000023591 denotes PriA
T5182 446-450 GO:0005657 denotes fork
T5183 476-480 GO:0005657 denotes fork
T5184 521-525 GO:0005657 denotes fork
T5185 574-578 GO:0005657 denotes fork
T5186 644-648 PR:000010246 denotes Mcm4
T5187 644-660 GO:0097373 denotes Mcm4/6/7 complex
T5188 670-685 SO:0000984 denotes single-stranded
T5189 751-766 SO:0000984 denotes single-stranded

2_test

Id Subject Object Predicate Lexical cue
15917436-9305914-76775516 356-358 9305914 denotes 10
15917436-12917421-76775517 607-609 12917421 denotes 25