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PMC:1134658 / 570-702 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T287 4-11 RB denotes rapidly
T288 12-19 VB denotes induced
T289 20-35 NN denotes phosphorylation
T290 36-38 IN denotes of
T291 39-48 NN denotes Smad1/5/8
T292 50-61 RB denotes Furthermore
T293 61-62 -COMMA- denotes ,
T294 63-83 NN denotes Smad-phosphorylation
T295 84-87 VB denotes was
T296 88-96 VB denotes followed
T297 97-99 IN denotes by
T298 100-112 NN denotes upregulation
T299 113-115 IN denotes of
T300 116-119 NN denotes Id1
T301 120-124 NN denotes mRNA
T302 125-128 CC denotes and
T303 129-132 NN denotes Id1
R166 T288 T287 arg1Of induced,rapidly
R167 T289 T288 arg2Of phosphorylation,induced
R168 T289 T290 arg1Of phosphorylation,of
R169 T291 T290 arg2Of Smad1/5/8,of
R170 T294 T295 arg1Of Smad-phosphorylation,was
R171 T294 T296 arg2Of Smad-phosphorylation,followed
R172 T296 T292 arg1Of followed,Furthermore
R173 T296 T293 arg1Of followed,","
R174 T296 T295 arg2Of followed,was
R177 T298 T296 arg1Of upregulation,followed
R178 T298 T297 arg2Of upregulation,by
R179 T298 T299 arg1Of upregulation,of
R180 T301 T300 arg1Of mRNA,Id1
R181 T301 T302 arg1Of mRNA,and
R182 T302 T299 arg2Of and,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T601 4-11 RB denotes rapidly
T602 12-19 VBD denotes induced
T603 20-35 NN denotes phosphorylation
T604 36-38 IN denotes of
T605 39-48 NNP denotes Smad1/5/8
T606 48-49 . denotes .
T607 50-61 RB denotes Furthermore
T608 61-62 , denotes ,
T609 63-83 NN denotes Smad-phosphorylation
T610 84-87 VBD denotes was
T611 88-96 VBN denotes followed
T612 97-99 IN denotes by
T613 100-112 NN denotes upregulation
T614 113-115 IN denotes of
T615 116-119 NNP denotes Id1
T616 120-124 NNP denotes mRNA
T617 125-128 CC denotes and
T618 129-132 NNP denotes Id1
R394 T601 T602 advmod rapidly,induced
R395 T602 T602 ROOT induced,induced
R396 T603 T602 dobj phosphorylation,induced
R397 T604 T603 prep of,phosphorylation
R398 T605 T604 pobj Smad1/5/8,of
R399 T606 T602 punct .,induced
R400 T607 T611 advmod Furthermore,followed
R401 T608 T611 punct ",",followed
R402 T609 T611 nsubjpass Smad-phosphorylation,followed
R403 T610 T611 auxpass was,followed
R404 T611 T611 ROOT followed,followed
R405 T612 T611 agent by,followed
R406 T613 T612 pobj upregulation,by
R407 T614 T613 prep of,upregulation
R408 T615 T616 compound Id1,mRNA
R409 T616 T614 pobj mRNA,of
R410 T617 T616 cc and,mRNA

GO-BP

Id Subject Object Predicate Lexical cue
T177 20-35 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation
T178 68-83 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

events-check-again

Id Subject Object Predicate Lexical cue
T861 12-19 Positive_regulation denotes induced
T862 12-19 Positive_regulation denotes induced
T863 12-19 Positive_regulation denotes induced
T864 20-35 Phosphorylation denotes phosphorylation
T865 20-35 Phosphorylation denotes phosphorylation
T866 20-35 Phosphorylation denotes phosphorylation
T867 39-44 Protein denotes Smad1
T868 45-46 Protein denotes 5
T869 47-48 Protein denotes 8
T870 63-67 Protein denotes Smad
T871 68-83 Phosphorylation denotes phosphorylation
T872 88-96 Positive_regulation denotes followed
T873 88-96 Positive_regulation denotes followed
T874 100-112 Positive_regulation denotes upregulation
T875 100-112 Positive_regulation denotes upregulation
T876 116-119 Protein denotes Id1
T877 129-132 Protein denotes Id1
R693 T874 T872 themeOf upregulation,followed
R694 T875 T873 themeOf upregulation,followed
R695 T876 T874 themeOf Id1,upregulation
R696 T877 T875 themeOf Id1,upregulation
R682 T864 T863 themeOf phosphorylation,induced
R683 T865 T862 themeOf phosphorylation,induced
R684 T866 T861 themeOf phosphorylation,induced
R685 T867 T864 themeOf Smad1,phosphorylation
R686 T868 T865 themeOf 5,phosphorylation
R687 T869 T866 themeOf 8,phosphorylation
R688 T870 T871 themeOf Smad,phosphorylation
R689 T871 T872 causeOf phosphorylation,followed
R690 T871 T873 causeOf phosphorylation,followed

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T763 12-19 Positive_regulation denotes induced
T764 20-35 Phosphorylation denotes phosphorylation
T765 39-48 Protein denotes Smad1/5/8
T766 63-67 Protein denotes Smad
T767 68-83 Phosphorylation denotes phosphorylation
T768 88-96 Positive_regulation denotes followed
T769 88-96 Positive_regulation denotes followed
T770 100-112 Positive_regulation denotes upregulation
T771 100-112 Positive_regulation denotes upregulation
T772 116-124 Protein denotes Id1 mRNA
R544 T767 T769 themeOf phosphorylation,followed
R545 T767 T768 themeOf phosphorylation,followed
R546 T770 T768 causeOf upregulation,followed
R547 T771 T769 causeOf upregulation,followed
R548 T772 T770 themeOf Id1 mRNA,upregulation
R541 T764 T763 themeOf phosphorylation,induced
R542 T765 T764 themeOf Smad1/5/8,phosphorylation
R543 T766 T767 themeOf Smad,phosphorylation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T111 12-19 Positive_regulation denotes induced
T112 12-19 Positive_regulation denotes induced
T113 12-19 Positive_regulation denotes induced
T114 20-35 Phosphorylation denotes phosphorylation
T115 20-35 Phosphorylation denotes phosphorylation
T116 20-35 Phosphorylation denotes phosphorylation
T117 39-44 Protein denotes Smad1
T118 45-46 Protein denotes 5
T119 47-48 Protein denotes 8
T120 63-67 Protein denotes Smad
T121 68-83 Phosphorylation denotes phosphorylation
T122 88-96 Positive_regulation denotes followed
T123 88-96 Positive_regulation denotes followed
T124 100-112 Positive_regulation denotes upregulation
T125 100-112 Positive_regulation denotes upregulation
T126 116-119 Protein denotes Id1
T127 129-132 Protein denotes Id1
R645 T114 T113 themeOf phosphorylation,induced
R646 T115 T112 themeOf phosphorylation,induced
R647 T116 T111 themeOf phosphorylation,induced
R648 T117 T114 themeOf Smad1,phosphorylation
R649 T118 T115 themeOf 5,phosphorylation
R650 T119 T116 themeOf 8,phosphorylation
R651 T120 T121 themeOf Smad,phosphorylation
R652 T121 T122 causeOf phosphorylation,followed
R653 T121 T123 causeOf phosphorylation,followed
R656 T124 T122 themeOf upregulation,followed
R657 T125 T123 themeOf upregulation,followed
R658 T126 T124 themeOf Id1,upregulation
R659 T127 T125 themeOf Id1,upregulation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T450 39-44 Q15797 denotes Smad1
T451 116-119 P41134 denotes Id1
T452 129-132 P41134 denotes Id1

test2

Id Subject Object Predicate Lexical cue Negation
T67 12-19 Positive_regulation denotes induced
T68 20-35 Phosphorylation denotes phosphorylation
T69 39-44 Protein denotes Smad1
T70 45-46 Protein denotes 5
T71 47-48 Protein denotes 8 true
T72 63-67 Protein denotes Smad true
T73 68-83 Phosphorylation denotes phosphorylation
T74 88-96 Positive_regulation denotes followed
T75 100-112 Positive_regulation denotes upregulation
T76 116-119 Protein denotes Id1
T77 129-132 Protein denotes Id1
R45 T68 T67 themeOf phosphorylation,induced
R46 T69 T68 themeOf Smad1,phosphorylation
R47 T70 T68 themeOf 5,phosphorylation
R48 T71 T68 themeOf 8,phosphorylation
R49 T72 T73 themeOf Smad,phosphorylation
R50 T73 T74 causeOf phosphorylation,followed
R51 T75 T74 themeOf upregulation,followed
R52 T76 T75 themeOf Id1,upregulation
R53 T77 T75 themeOf Id1,upregulation

tees-test

Id Subject Object Predicate Lexical cue
T56 20-35 GO:0016310 denotes phosphorylation
T57 39-44 PR:Q9I8V2 denotes Smad1
T58 39-44 PR:P97588 denotes Smad1
T59 39-44 Q15797 denotes Smad1
T60 39-44 PR:000000363 denotes Smad1
T61 39-44 PR:P70340 denotes Smad1
T62 39-44 P70340 denotes Smad1
T63 39-44 Q9I962 denotes Smad1
T64 39-44 PR:Q15797 denotes Smad1
T65 39-44 P97588 denotes Smad1
T66 39-44 Q9I8V2 denotes Smad1
T67 39-44 Q1JQA2 denotes Smad1
T68 68-83 GO:0016310 denotes phosphorylation
T69 116-119 PR:P41134 denotes Id1
T70 116-119 PR:P20067 denotes Id1
T71 116-119 PR:P41135 denotes Id1
T72 116-119 PR:000000039 denotes Id1
T73 120-124 D012333 denotes mRNA
T74 120-124 CHEBI:33699 denotes mRNA
T75 120-124 SO:0000234 denotes mRNA
T76 129-132 PR:P41134 denotes Id1
T77 129-132 PR:P20067 denotes Id1
T78 129-132 PR:P41135 denotes Id1
T79 129-132 PR:000000039 denotes Id1