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PMC:1087847 / 37457-37733 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T10748 0-276 sentence denotes An equal volume of buffer 3 was added in aliquots (20 mM Hepes, pH 7.9, 1.5 mM MgCl2, 800 mM KCl, 0.2 mM EDTA, 25%v/v glycerine, 0.5 mM DTT, 0.5 mM PMSF, 1% NP40, protease inhibitor cocktail (Sigma)) and the solution was incubated while shaking for further 30 minutes on ice.
T10749 1-3 DT denotes An
T10750 10-16 NN denotes volume
T10751 4-9 JJ denotes equal
T10752 33-38 VBN denotes added
T10753 17-19 IN denotes of
T10754 20-26 NN denotes buffer
T10755 27-28 CD denotes 3
T10756 29-32 VBD denotes was
T10757 39-41 IN denotes in
T10758 42-50 NNS denotes aliquots
T10759 51-52 -LRB- denotes (
T10760 193-198 NNP denotes Sigma
T10761 52-54 CD denotes 20
T10762 55-57 NN denotes mM
T10763 58-63 NN denotes Hepes
T10764 63-65 , denotes ,
T10765 65-67 NN denotes pH
T10766 68-71 CD denotes 7.9
T10767 71-73 , denotes ,
T10768 73-76 CD denotes 1.5
T10769 77-79 NN denotes mM
T10770 80-85 NN denotes MgCl2
T10771 85-87 , denotes ,
T10772 87-90 CD denotes 800
T10773 91-93 NN denotes mM
T10774 94-97 NN denotes KCl
T10775 97-99 , denotes ,
T10776 99-102 CD denotes 0.2
T10777 103-105 NN denotes mM
T10778 106-110 NN denotes EDTA
T10779 110-112 , denotes ,
T10780 112-114 CD denotes 25
T10781 114-115 NN denotes %
T10782 119-128 NN denotes glycerine
T10783 115-116 NN denotes v
T10784 116-117 SYM denotes /
T10785 117-118 NN denotes v
T10786 128-130 , denotes ,
T10787 130-133 CD denotes 0.5
T10788 134-136 NN denotes mM
T10789 137-140 NN denotes DTT
T10790 140-142 , denotes ,
T10791 142-145 CD denotes 0.5
T10792 146-148 NN denotes mM
T10793 149-153 NN denotes PMSF
T10794 153-155 , denotes ,
T10795 155-156 CD denotes 1
T10796 156-157 NN denotes %
T10797 158-162 NN denotes NP40
T10798 162-164 , denotes ,
T10799 164-172 NN denotes protease
T10800 173-182 NN denotes inhibitor
T10801 183-191 NN denotes cocktail
T10802 192-193 -LRB- denotes (
T10803 198-199 -RRB- denotes )
T10804 199-200 -RRB- denotes )
T10805 201-204 CC denotes and
T10806 205-208 DT denotes the
T10807 209-217 NN denotes solution
T10808 222-231 VBN denotes incubated
T10809 218-221 VBD denotes was
T10810 232-237 IN denotes while
T10811 238-245 VBG denotes shaking
T10812 246-249 IN denotes for
T10813 250-257 JJ denotes further
T10814 261-268 NNS denotes minutes
T10815 258-260 CD denotes 30
T10816 269-271 IN denotes on
T10817 272-275 NN denotes ice
T10818 275-276 . denotes .
R5261 T10749 T10750 det An,volume
R5262 T10750 T10752 nsubjpass volume,added
R5263 T10751 T10750 amod equal,volume
R5264 T10753 T10750 prep of,volume
R5265 T10754 T10753 pobj buffer,of
R5266 T10755 T10754 nummod 3,buffer
R5267 T10756 T10752 auxpass was,added
R5268 T10757 T10752 prep in,added
R5269 T10758 T10757 pobj aliquots,in
R5270 T10759 T10760 punct (,Sigma
R5271 T10760 T10752 parataxis Sigma,added
R5272 T10761 T10762 nummod 20,mM
R5273 T10762 T10763 compound mM,Hepes
R5274 T10763 T10760 dep Hepes,Sigma
R5275 T10764 T10763 punct ", ",Hepes
R5276 T10765 T10763 npadvmod pH,Hepes
R5277 T10766 T10765 nummod 7.9,pH
R5278 T10767 T10763 punct ", ",Hepes
R5279 T10768 T10769 nummod 1.5,mM
R5280 T10769 T10770 compound mM,MgCl2
R5281 T10770 T10763 appos MgCl2,Hepes
R5282 T10771 T10763 punct ", ",Hepes
R5283 T10772 T10773 nummod 800,mM
R5284 T10773 T10774 compound mM,KCl
R5285 T10774 T10763 appos KCl,Hepes
R5286 T10775 T10763 punct ", ",Hepes
R5287 T10776 T10777 nummod 0.2,mM
R5288 T10777 T10778 compound mM,EDTA
R5289 T10778 T10763 appos EDTA,Hepes
R5290 T10779 T10763 punct ", ",Hepes
R5291 T10780 T10781 nummod 25,%
R5292 T10781 T10782 nmod %,glycerine
R5293 T10782 T10763 appos glycerine,Hepes
R5294 T10783 T10781 appos v,%
R5295 T10784 T10785 punct /,v
R5296 T10785 T10783 prep v,v
R5297 T10786 T10763 punct ", ",Hepes
R5298 T10787 T10788 nummod 0.5,mM
R5299 T10788 T10789 compound mM,DTT
R5300 T10789 T10763 appos DTT,Hepes
R5301 T10790 T10763 punct ", ",Hepes
R5302 T10791 T10792 nummod 0.5,mM
R5303 T10792 T10793 compound mM,PMSF
R5304 T10793 T10763 appos PMSF,Hepes
R5305 T10794 T10763 punct ", ",Hepes
R5306 T10795 T10796 nummod 1,%
R5307 T10796 T10797 compound %,NP40
R5308 T10797 T10763 appos NP40,Hepes
R5309 T10798 T10763 punct ", ",Hepes
R5310 T10799 T10800 compound protease,inhibitor
R5311 T10800 T10801 compound inhibitor,cocktail
R5312 T10801 T10763 appos cocktail,Hepes
R5313 T10802 T10760 punct (,Sigma
R5314 T10803 T10760 punct ),Sigma
R5315 T10804 T10760 punct ),Sigma
R5316 T10805 T10752 cc and,added
R5317 T10806 T10807 det the,solution
R5318 T10807 T10808 nsubjpass solution,incubated
R5319 T10808 T10752 conj incubated,added
R5320 T10809 T10808 auxpass was,incubated
R5321 T10810 T10811 mark while,shaking
R5322 T10811 T10808 advcl shaking,incubated
R5323 T10812 T10811 prep for,shaking
R5324 T10813 T10814 amod further,minutes
R5325 T10814 T10812 pobj minutes,for
R5326 T10815 T10814 nummod 30,minutes
R5327 T10816 T10811 prep on,shaking
R5328 T10817 T10816 pobj ice,on
R5329 T10818 T10808 punct .,incubated

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T10522 20-26 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T10523 58-63 CHEBI:46756 denotes Hepes
T10524 80-85 CHEBI:6636 denotes MgCl2
T10525 94-97 CHEBI:32588 denotes KCl
T10526 106-110 CHEBI_EXT:EDTA denotes EDTA
T10527 119-128 CHEBI:17754 denotes glycerine
T10528 137-140 CHEBI:18320 denotes DTT
T10529 149-153 CHEBI:8102 denotes PMSF
T10530 158-162 CHEBI:63016 denotes NP40
T10531 164-182 CHEBI_GO_EXT:peptidase_or_protease_or_proteinase_inhibitor denotes protease inhibitor
T10532 183-191 CHEBI:60004 denotes cocktail
T10533 209-217 CHEBI:75958 denotes solution

biosemtest

Id Subject Object Predicate Lexical cue
T10272 68-70 UMLS/C0020283 denotes 7.
T10273 45-53 UMLS/C1510844 denotes quots (2
T10274 36-41 UMLS/C1883712 denotes ed in
T10277 261-271 UMLS/C0456693 denotes minutes on
T10288 167-185 UP/P80060 denotes tease inhibitor co
T10289 13-19 UMLS/C2700258 denotes ume of
T10292 36-41 UMLS/C1720086 denotes ed in
T10295 13-19 UMLS/C1690016 denotes ume of
T10299 140-143 UMLS/C0012789 denotes , 0
T10301 7-12 UMLS/C0439089 denotes al vo
T10305 225-234 UMLS/C1439852 denotes ubated wh
T10307 7-12 UMLS/C0205163 denotes al vo
T10312 167-185 UMLS/C0033607 denotes tease inhibitor co
T10315 109-113 UMLS/C0013618 denotes A, 2
T10322 167-185 UP/P61153 denotes tease inhibitor co
T10326 212-220 UMLS/C2699488 denotes ution wa
T10332 241-248 UMLS/C1883023 denotes king fo
T10340 23-29 UMLS/C0006353 denotes fer 3
T10341 212-220 UMLS/C0037633 denotes ution wa
T10347 13-19 UMLS/C1705102 denotes ume of
T10350 241-248 UMLS/C0040822 denotes king fo
T10363 68-70 UMLS/C0450407 denotes 7.
T10364 212-220 UMLS/C0525069 denotes ution wa
T10367 68-70 UMLS/C0450408 denotes 7.
T10368 186-194 UMLS/C0678420 denotes ktail (S
T10370 68-70 UMLS/C0450409 denotes 7.
T10374 68-70 UMLS/C2363150 denotes 7.
T10378 68-70 UMLS/C0031526 denotes 7.
T10388 7-12 UMLS/C1549782 denotes al vo
T10393 212-220 UMLS/C1382100 denotes ution wa
T10395 196-201 UMLS/C0227391 denotes ma))
T10399 36-41 UMLS/C1524062 denotes ed in
T10407 13-19 UMLS/C0449468 denotes ume of
T10414 167-185 UP/P26228 denotes tease inhibitor co
T10418 167-185 UP/P43131 denotes tease inhibitor co
T10423 122-131 UMLS/C0017861 denotes cerine, 0
T10426 109-113 UMLS/C0558745 denotes A, 2
T10432 83-88 UMLS/C0024472 denotes l2, 8
T10438 68-70 UMLS/C1304686 denotes 7.
T10443 261-271 UMLS/C1442458 denotes minutes on
T10444 196-201 UMLS/C1719918 denotes ma))

craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T10478 58-63 CHEBI:46756 denotes Hepes
T10479 80-85 CHEBI:6636 denotes MgCl2
T10480 94-97 CHEBI:32588 denotes KCl
T10481 119-128 CHEBI:17754 denotes glycerine
T10482 137-140 CHEBI:18320 denotes DTT
T10483 149-153 CHEBI:8102 denotes PMSF
T10484 158-162 CHEBI:63016 denotes NP40
T10485 183-191 CHEBI:60004 denotes cocktail
T10486 209-217 CHEBI:75958 denotes solution