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PMC:1087847 / 37187-37457 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T10678 0-270 sentence denotes For partial extraction of the nucleoplasm according to [37], nuclei were resuspended in buffer 2 (20 mM Hepes, pH 7.9, 1.5 mM MgCl2, 20 mM KCl, 0.2 mM EDTA, 25%v/v glycerine, 0.5 mM DTT, 0.5 mM PMSF; nuclei of 107cells/30 μl buffer) and incubated on ice for 30 minutes.
T10679 1-4 IN denotes For
T10680 74-85 VBN denotes resuspended
T10681 5-12 JJ denotes partial
T10682 13-23 NN denotes extraction
T10683 24-26 IN denotes of
T10684 27-30 DT denotes the
T10685 31-42 NN denotes nucleoplasm
T10686 43-52 VBG denotes according
T10687 53-55 IN denotes to
T10688 56-57 -LRB- denotes [
T10689 57-59 CD denotes 37
T10690 59-60 -RRB- denotes ]
T10691 60-62 , denotes ,
T10692 62-68 NNS denotes nuclei
T10693 69-73 VBD denotes were
T10694 86-88 IN denotes in
T10695 89-95 NN denotes buffer
T10696 96-97 CD denotes 2
T10697 98-99 -LRB- denotes (
T10698 105-110 NN denotes Hepes
T10699 99-101 CD denotes 20
T10700 102-104 NN denotes mM
T10701 110-112 , denotes ,
T10702 112-114 NN denotes pH
T10703 115-118 CD denotes 7.9
T10704 118-120 , denotes ,
T10705 120-123 CD denotes 1.5
T10706 124-126 NN denotes mM
T10707 127-132 NN denotes MgCl2
T10708 132-134 , denotes ,
T10709 134-136 CD denotes 20
T10710 137-139 NN denotes mM
T10711 140-143 NN denotes KCl
T10712 143-145 , denotes ,
T10713 145-148 CD denotes 0.2
T10714 149-151 NN denotes mM
T10715 152-156 NN denotes EDTA
T10716 156-158 , denotes ,
T10717 158-160 CD denotes 25
T10718 160-161 NN denotes %
T10719 165-174 NN denotes glycerine
T10720 161-162 NN denotes v
T10721 162-163 SYM denotes /
T10722 163-164 NN denotes v
T10723 174-176 , denotes ,
T10724 176-179 CD denotes 0.5
T10725 180-182 NN denotes mM
T10726 183-186 NN denotes DTT
T10727 186-188 , denotes ,
T10728 188-191 CD denotes 0.5
T10729 192-194 NN denotes mM
T10730 195-199 NN denotes PMSF
T10731 199-200 : denotes ;
T10732 201-207 NNS denotes nuclei
T10733 208-210 IN denotes of
T10734 211-219 NNS denotes 107cells
T10735 226-232 NN denotes buffer
T10736 219-220 SYM denotes /
T10737 223-225 NN denotes μl
T10738 220-222 CD denotes 30
T10739 232-233 -RRB- denotes )
T10740 234-237 CC denotes and
T10741 238-247 VBN denotes incubated
T10742 248-250 IN denotes on
T10743 251-254 NN denotes ice
T10744 255-258 IN denotes for
T10745 259-261 CD denotes 30
T10746 262-269 NNS denotes minutes
T10747 269-270 . denotes .
R5193 T10679 T10680 prep For,resuspended
R5194 T10681 T10682 amod partial,extraction
R5195 T10682 T10679 pobj extraction,For
R5196 T10683 T10682 prep of,extraction
R5197 T10684 T10685 det the,nucleoplasm
R5198 T10685 T10683 pobj nucleoplasm,of
R5199 T10686 T10682 prep according,extraction
R5200 T10687 T10686 prep to,according
R5201 T10688 T10687 punct [,to
R5202 T10689 T10687 pobj 37,to
R5203 T10690 T10680 punct ],resuspended
R5204 T10691 T10680 punct ", ",resuspended
R5205 T10692 T10680 nsubjpass nuclei,resuspended
R5206 T10693 T10680 auxpass were,resuspended
R5207 T10694 T10680 prep in,resuspended
R5208 T10695 T10694 pobj buffer,in
R5209 T10696 T10695 nummod 2,buffer
R5210 T10697 T10698 punct (,Hepes
R5211 T10698 T10695 parataxis Hepes,buffer
R5212 T10699 T10700 nummod 20,mM
R5213 T10700 T10698 compound mM,Hepes
R5214 T10701 T10698 punct ", ",Hepes
R5215 T10702 T10698 npadvmod pH,Hepes
R5216 T10703 T10702 nummod 7.9,pH
R5217 T10704 T10698 punct ", ",Hepes
R5218 T10705 T10706 nummod 1.5,mM
R5219 T10706 T10707 compound mM,MgCl2
R5220 T10707 T10698 appos MgCl2,Hepes
R5221 T10708 T10698 punct ", ",Hepes
R5222 T10709 T10710 nummod 20,mM
R5223 T10710 T10711 compound mM,KCl
R5224 T10711 T10698 appos KCl,Hepes
R5225 T10712 T10698 punct ", ",Hepes
R5226 T10713 T10714 nummod 0.2,mM
R5227 T10714 T10715 compound mM,EDTA
R5228 T10715 T10698 appos EDTA,Hepes
R5229 T10716 T10698 punct ", ",Hepes
R5230 T10717 T10718 nummod 25,%
R5231 T10718 T10719 nmod %,glycerine
R5232 T10719 T10698 appos glycerine,Hepes
R5233 T10720 T10718 appos v,%
R5234 T10721 T10722 punct /,v
R5235 T10722 T10720 prep v,v
R5236 T10723 T10698 punct ", ",Hepes
R5237 T10724 T10725 nummod 0.5,mM
R5238 T10725 T10726 compound mM,DTT
R5239 T10726 T10698 appos DTT,Hepes
R5240 T10727 T10698 punct ", ",Hepes
R5241 T10728 T10729 nummod 0.5,mM
R5242 T10729 T10730 compound mM,PMSF
R5243 T10730 T10698 appos PMSF,Hepes
R5244 T10731 T10698 punct ;,Hepes
R5245 T10732 T10698 appos nuclei,Hepes
R5246 T10733 T10732 prep of,nuclei
R5247 T10734 T10735 nmod 107cells,buffer
R5248 T10735 T10733 pobj buffer,of
R5249 T10736 T10737 punct /,μl
R5250 T10737 T10734 prep μl,107cells
R5251 T10738 T10737 nummod 30,μl
R5252 T10739 T10698 punct ),Hepes
R5253 T10740 T10680 cc and,resuspended
R5254 T10741 T10680 conj incubated,resuspended
R5255 T10742 T10741 prep on,incubated
R5256 T10743 T10742 pobj ice,on
R5257 T10744 T10741 prep for,incubated
R5258 T10745 T10746 nummod 30,minutes
R5259 T10746 T10744 pobj minutes,for
R5260 T10747 T10680 punct .,resuspended

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10510 31-42 GO:0005654 denotes nucleoplasm
T10511 62-68 GO:0005634 denotes nuclei
T10512 89-95 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T10513 105-110 CHEBI:46756 denotes Hepes
T10514 127-132 CHEBI:6636 denotes MgCl2
T10515 140-143 CHEBI:32588 denotes KCl
T10516 152-156 CHEBI_EXT:EDTA denotes EDTA
T10517 165-174 CHEBI:17754 denotes glycerine
T10518 183-186 CHEBI:18320 denotes DTT
T10519 195-199 CHEBI:8102 denotes PMSF
T10520 201-207 GO:0005634 denotes nuclei
T10521 226-232 CHEBI_CHMO_EXT:buffer_solution denotes buffer

biosemtest

Id Subject Object Predicate Lexical cue
T10271 114-116 UMLS/C0020283 denotes 7
T10279 55-57 UMLS/C0319022 denotes [
T10286 254-257 UMLS/C0025611 denotes fo
T10298 185-188 UMLS/C0012789 denotes T,
T10304 241-250 UMLS/C1439852 denotes ubated on
T10314 154-158 UMLS/C0013618 denotes TA,
T10338 91-97 UMLS/C0006353 denotes ffer 2
T10339 229-235 UMLS/C0006353 denotes fer) a
T10351 7-14 UMLS/C0728938 denotes rtial e
T10352 33-44 UMLS/C0682537 denotes cleoplasm a
T10355 45-54 UMLS/C0680240 denotes cording t
T10362 114-116 UMLS/C0450407 denotes 7
T10366 114-116 UMLS/C0450408 denotes 7
T10369 114-116 UMLS/C0450409 denotes 7
T10373 114-116 UMLS/C2363150 denotes 7
T10377 114-116 UMLS/C0031526 denotes 7
T10391 15-25 UMLS/C0684295 denotes traction o
T10401 254-257 UMLS/C0349714 denotes fo
T10421 15-25 UMLS/C0185115 denotes traction o
T10422 167-176 UMLS/C0017861 denotes ycerine,
T10425 154-158 UMLS/C0558745 denotes TA,
T10428 7-14 UMLS/C1550516 denotes rtial e
T10431 129-134 UMLS/C0024472 denotes Cl2,
T10437 114-116 UMLS/C1304686 denotes 7
T10446 254-257 UMLS/C0020746 denotes fo
T10455 64-70 UMLS/C0007610 denotes clei w
T10456 203-209 UMLS/C0007610 denotes clei o

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10469 31-42 GO:0005654 denotes nucleoplasm
T10470 62-68 GO:0005634 denotes nuclei
T10471 105-110 CHEBI:46756 denotes Hepes
T10472 127-132 CHEBI:6636 denotes MgCl2
T10473 140-143 CHEBI:32588 denotes KCl
T10474 165-174 CHEBI:17754 denotes glycerine
T10475 183-186 CHEBI:18320 denotes DTT
T10476 195-199 CHEBI:8102 denotes PMSF
T10477 201-207 GO:0005634 denotes nuclei