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PMC:1087847 / 20143-20377 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T5293 0-234 sentence denotes To verify the presence of endogenous Annexin A7 in nuclei, we used a biochemical approach and purified nuclei from neuro-2a, PC-12, and C6 cells and treated them with a hypotonic extraction buffer to obtain the nucleoplasm (Fig. 7A).
T5294 1-3 TO denotes To
T5295 4-10 VB denotes verify
T5296 63-67 VBD denotes used
T5297 11-14 DT denotes the
T5298 15-23 NN denotes presence
T5299 24-26 IN denotes of
T5300 27-37 JJ denotes endogenous
T5301 46-48 NN denotes A7
T5302 38-45 NN denotes Annexin
T5303 49-51 IN denotes in
T5304 52-58 NNS denotes nuclei
T5305 58-60 , denotes ,
T5306 60-62 PRP denotes we
T5307 68-69 DT denotes a
T5308 82-90 NN denotes approach
T5309 70-81 JJ denotes biochemical
T5310 91-94 CC denotes and
T5311 95-103 VBN denotes purified
T5312 104-110 NNS denotes nuclei
T5313 111-115 IN denotes from
T5314 116-121 NN denotes neuro
T5315 140-145 NNS denotes cells
T5316 121-122 HYPH denotes -
T5317 122-124 CD denotes 2a
T5318 124-126 , denotes ,
T5319 126-128 NN denotes PC
T5320 128-129 HYPH denotes -
T5321 129-131 CD denotes 12
T5322 131-133 , denotes ,
T5323 133-136 CC denotes and
T5324 137-139 NN denotes C6
T5325 146-149 CC denotes and
T5326 150-157 VBN denotes treated
T5327 158-162 PRP denotes them
T5328 163-167 IN denotes with
T5329 168-169 DT denotes a
T5330 191-197 NN denotes buffer
T5331 170-179 JJ denotes hypotonic
T5332 180-190 NN denotes extraction
T5333 198-200 TO denotes to
T5334 201-207 VB denotes obtain
T5335 208-211 DT denotes the
T5336 212-223 NN denotes nucleoplasm
T5337 224-225 -LRB- denotes (
T5338 230-232 NN denotes 7A
T5339 225-229 NN denotes Fig.
T5340 232-233 -RRB- denotes )
T5341 233-234 . denotes .
R2324 T5294 T5295 aux To,verify
R2325 T5295 T5296 advcl verify,used
R2326 T5297 T5298 det the,presence
R2327 T5298 T5295 dobj presence,verify
R2328 T5299 T5298 prep of,presence
R2329 T5300 T5301 amod endogenous,A7
R2330 T5301 T5299 pobj A7,of
R2331 T5302 T5301 compound Annexin,A7
R2332 T5303 T5295 prep in,verify
R2333 T5304 T5303 pobj nuclei,in
R2334 T5305 T5296 punct ", ",used
R2335 T5306 T5296 nsubj we,used
R2336 T5307 T5308 det a,approach
R2337 T5308 T5296 dobj approach,used
R2338 T5309 T5308 amod biochemical,approach
R2339 T5310 T5296 cc and,used
R2340 T5311 T5296 conj purified,used
R2341 T5312 T5311 dobj nuclei,purified
R2342 T5313 T5311 prep from,purified
R2343 T5314 T5315 nmod neuro,cells
R2344 T5315 T5313 pobj cells,from
R2345 T5316 T5314 punct -,neuro
R2346 T5317 T5314 nummod 2a,neuro
R2347 T5318 T5314 punct ", ",neuro
R2348 T5319 T5314 conj PC,neuro
R2349 T5320 T5319 punct -,PC
R2350 T5321 T5319 nummod 12,PC
R2351 T5322 T5319 punct ", ",PC
R2352 T5323 T5319 cc and,PC
R2353 T5324 T5319 conj C6,PC
R2354 T5325 T5296 cc and,used
R2355 T5326 T5296 conj treated,used
R2356 T5327 T5326 dobj them,treated
R2357 T5328 T5326 prep with,treated
R2358 T5329 T5330 det a,buffer
R2359 T5330 T5328 pobj buffer,with
R2360 T5331 T5330 amod hypotonic,buffer
R2361 T5332 T5330 compound extraction,buffer
R2362 T5333 T5334 aux to,obtain
R2363 T5334 T5326 advcl obtain,treated
R2364 T5335 T5336 det the,nucleoplasm
R2365 T5336 T5334 dobj nucleoplasm,obtain
R2366 T5337 T5338 punct (,7A
R2367 T5338 T5326 parataxis 7A,treated
R2368 T5339 T5338 compound Fig.,7A
R2369 T5340 T5338 punct ),7A
R2370 T5341 T5296 punct .,used

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5088 38-48 PR_EXT:000004080 denotes Annexin A7
T5089 52-58 GO:0005634 denotes nuclei
T5090 70-81 CHEBI_EXT:biochemical denotes biochemical
T5091 104-110 GO:0005634 denotes nuclei
T5092 140-145 CL_GO_EXT:cell denotes cells
T5093 191-197 CHEBI_CHMO_EXT:buffer_solution denotes buffer
T5094 212-223 GO:0005654 denotes nucleoplasm

biosemtest

Id Subject Object Predicate Lexical cue
T4622 5-11 UMLS/C1711411 denotes erify
T4651 2-4 UMLS/C0319022 denotes o
T4652 199-201 UMLS/C0319022 denotes o
T4663 127-132 UMLS/C0662453 denotes C-12,
T4670 141-146 UMLS/C1269647 denotes ells
T4675 39-49 UP/Q07076 denotes nnexin A7
T4687 39-49 UP/P24639 denotes nnexin A7
T4696 127-132 UMLS/C0085262 denotes C-12,
T4704 39-49 UP/P20072 denotes nnexin A7
T4716 141-146 UMLS/C1704653 denotes ells
T4725 96-104 UMLS/C1998793 denotes urified
T4727 16-24 UMLS/C0392148 denotes resence
T4737 213-224 UMLS/C0682537 denotes ucleoplasm
T4748 5-11 UMLS/C1553511 denotes erify
T4753 202-208 UMLS/C1301820 denotes btain
T4764 39-49 UMLS/C0103408 denotes nnexin A7
T4771 141-146 UMLS/C1948049 denotes ells
T4774 138-140 UMLS/C1305860 denotes 6
T4777 181-191 UMLS/C0185115 denotes xtraction
T4781 202-208 UMLS/C1706701 denotes btain
T4783 141-146 UMLS/C1136359 denotes ells
T4788 151-158 UMLS/C1292734 denotes reated
T4791 83-91 UMLS/C1292724 denotes pproach
T4809 39-49 UP/Q92125 denotes nnexin A7
T4823 171-180 UMLS/C0241938 denotes ypotonic
T4824 226-229 UMLS/C0349966 denotes ig.
T4836 16-24 UMLS/C0150312 denotes resence
T4851 138-140 UMLS/C1419009 denotes 6
T4857 138-140 UMLS/C1413014 denotes 6
T4864 5-11 UMLS/C1554081 denotes erify
T4874 71-82 UMLS/C0205474 denotes iochemical
T4889 192-198 UMLS/C0006353 denotes uffer
T4895 39-49 UMLS/C1412427 denotes nnexin A7
T4902 28-38 UMLS/C0205227 denotes ndogenous
T4908 39-49 UP/Q4R5L5 denotes nnexin A7
T4914 39-49 UP/P20073 denotes nnexin A7
T4918 83-91 UMLS/C0449445 denotes pproach
T4932 151-158 UMLS/C0332293 denotes reated
T4933 181-191 UMLS/C0684295 denotes xtraction
T4945 141-146 UMLS/C0007634 denotes ells
T4952 138-140 UP/P51524 denotes 6
T4962 151-158 UMLS/C1522326 denotes reated
T4993 53-59 UMLS/C0007610 denotes uclei,
T4994 105-111 UMLS/C0007610 denotes uclei

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T5021 38-48 PR:000004080 denotes Annexin A7
T5022 52-58 GO:0005634 denotes nuclei
T5023 104-110 GO:0005634 denotes nuclei
T5024 212-223 GO:0005654 denotes nucleoplasm