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PMC:1064895 / 17993-18390 JSONTXT

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test3

Id Subject Object Predicate Lexical cue
T13348 210-220 Gene_expression denotes production
T13347 204-209 Protein denotes IL-17
T13346 196-203 Positive_regulation denotes induced
T13345 175-183 Negative_regulation denotes decrease
T13344 36-46 Gene_expression denotes production
T13343 30-35 Protein denotes IL-17
T13342 20-29 Positive_regulation denotes increased
T13332 204-209 Protein denotes IL-17
T13331 30-35 Protein denotes IL-17
R7273 T13343 T13344 themeOf IL-17,production
R7274 T13344 T13342 themeOf production,increased
R7275 T13346 T13345 themeOf induced,decrease
R7276 T13347 T13348 themeOf IL-17,production
R7277 T13348 T13346 themeOf production,induced

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13963 210-220 Gene_expression denotes production
T13962 175-183 Negative_regulation denotes decrease
T13961 187-203 Positive_regulation denotes anti-CD3-induced
T13960 20-29 Positive_regulation denotes increased
T13959 36-46 Gene_expression denotes production
T13950 204-209 Protein denotes IL-17
T13949 30-35 Protein denotes IL-17
R7590 T13949 T13959 themeOf IL-17,production
R7591 T13950 T13963 themeOf IL-17,production
R7599 T13959 T13960 themeOf production,increased
R7600 T13963 T13962 themeOf production,decrease
R7601 T13963 T13961 themeOf production,anti-CD3-induced

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T14385 210-220 Gene_expression denotes production
T14384 187-203 Positive_regulation denotes anti-CD3-induced
T14383 175-183 Negative_regulation denotes decrease
T14382 36-46 Gene_expression denotes production
T14381 20-29 Positive_regulation denotes increased
T14372 204-209 Protein denotes IL-17
T14371 30-35 Protein denotes IL-17
R7938 T14371 T14382 themeOf IL-17,production
R7939 T14372 T14385 themeOf IL-17,production
R7947 T14382 T14381 themeOf production,increased
R7948 T14385 T14383 themeOf production,decrease
R7949 T14385 T14384 themeOf production,anti-CD3-induced

biosemtest

Id Subject Object Predicate Lexical cue
T13519 204-220 UMLS/C1819444 denotes IL-17 production
T13518 30-46 UMLS/C1819444 denotes IL-17 production
T13511 79-83 UMLS/C0205309 denotes know
T13510 163-174 UMLS/C1546944 denotes significant
T13493 264-273 UMLS/C1999216 denotes nhibitor,
T13486 196-203 UMLS/C0205263 denotes induced
T13485 284-297 UMLS/C0011777 denotes examethasone
T13473 175-183 UMLS/C0547047 denotes decrease
T13458 175-183 UMLS/C0205216 denotes decrease
T13457 20-29 UMLS/C0205217 denotes increased
T13452 275-279 UMLS/C0084183 denotes DTC
T13448 53-57 UMLS/C1321301 denotes PBMC
T13445 124-132 UMLS/C1314939 denotes involved
T13434 264-273 UMLS/C0243077 denotes nhibitor,
T13429 90-118 UMLS/C0086982 denotes signal transduction pathways
T13424 124-132 UMLS/C1947935 denotes involved
T13414 225-233 UMLS/C1441672 denotes observed
T13413 7-15 UMLS/C1441672 denotes observed
T13408 326-331 UMLS/C0439044 denotes lone
T13407 175-183 UMLS/C0392756 denotes decrease
T13393 76-78 UMLS/C0319022 denotes to
T13390 370-375 UMLS/C0439297 denotes l, re
T13387 152-155 UMLS/C0349966 denotes Fig
T13385 175-183 UMLS/C0442797 denotes decrease
T13383 20-29 UMLS/C0442805 denotes increased
T13381 20-29 UMLS/C0442808 denotes increased
T13377 163-174 UMLS/C0750502 denotes significant
T13370 301-311 UMLS/C1707455 denotes omparison

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T13622 76-78 TO denotes to
T13621 66-75 JJ denotes important
T13620 62-65 VB denotes was
T13619 59-61 PRP denotes it
T13618 57-58 -COMMA- denotes ,
T13617 53-57 NN denotes PBMC
T13616 50-52 NN denotes RA
T13615 47-49 IN denotes in
T13614 36-46 NN denotes production
T13613 30-35 NN denotes IL-17
T13612 20-29 VB denotes increased
T13611 16-19 DT denotes the
T13610 7-15 VB denotes observed
T13609 0-6 VB denotes Having
T13678 395-396 -RRB- denotes )
T13677 391-395 CD denotes 0.05
T13676 389-390 SYM denotes <
T13675 387-388 NN denotes P
T13674 385-386 -COLON- denotes ;
T13673 373-385 RB denotes respectively
T13672 371-372 -COMMA- denotes ,
T13671 366-371 NN denotes pg/ml
T13670 363-365 CD denotes 19
T13669 361-362 SYM denotes ±
T13668 358-360 CD denotes 98
T13667 351-357 IN denotes versus
T13666 348-350 CD denotes 11
T13665 346-347 CC denotes ±
T13664 343-345 CD denotes 54
T13663 339-342 CC denotes and
T13662 337-338 CD denotes 5
T13661 335-336 CC denotes ±
T13660 332-334 CD denotes 38
T13659 331-332 -LRB- denotes (
T13658 325-330 RB denotes alone
T13657 316-324 NN denotes anti-CD3
T13656 311-315 IN denotes with
T13655 300-310 NN denotes comparison
T13654 297-299 IN denotes in
T13653 283-296 NN denotes dexamethasone
T13652 279-282 CC denotes and
T13651 274-278 NN denotes PDTC
T13650 272-273 -COMMA- denotes ,
T13649 263-272 NN denotes inhibitor
T13648 257-262 NN denotes NF-κB
T13647 252-256 IN denotes with
T13646 239-251 VB denotes co-incubated
T13645 234-238 WRB denotes when
T13644 225-233 VB denotes observed
T13643 221-224 VB denotes was
T13642 210-220 NN denotes production
T13641 204-209 NN denotes IL-17
T13640 187-203 JJ denotes anti-CD3-induced
T13639 184-186 IN denotes in
T13638 175-183 NN denotes decrease
T13637 163-174 JJ denotes significant
T13636 160-162 DT denotes an
T13635 158-159 -COMMA- denotes ,
T13634 157-158 CD denotes 3
T13633 152-156 NNP denotes Fig.
T13632 149-151 IN denotes in
T13631 137-148 VB denotes illustrated
T13630 134-136 IN denotes As
T13629 124-132 VB denotes involved
T13628 119-123 VB denotes were
T13627 110-118 NN denotes pathways
T13626 97-109 NN denotes transduction
T13625 90-96 NN denotes signal
T13624 84-89 WDT denotes which
T13623 79-83 VB denotes know
R7318 T13610 T13609 arg2Of observed,Having
R7319 T13614 T13610 arg2Of production,observed
R7320 T13614 T13611 arg1Of production,the
R7321 T13614 T13612 arg2Of production,increased
R7322 T13614 T13613 arg1Of production,IL-17
R7323 T13614 T13615 arg1Of production,in
R7324 T13617 T13615 arg2Of PBMC,in
R7325 T13617 T13616 arg1Of PBMC,RA
R7326 T13620 T13609 modOf was,Having
R7327 T13620 T13618 arg1Of was,","
R7328 T13621 T13620 arg2Of important,was
R7329 T13623 T13609 arg1Of know,Having
R7330 T13623 T13610 arg1Of know,observed
R7331 T13623 T13619 arg1Of know,it
R7332 T13623 T13620 arg1Of know,was
R7333 T13623 T13621 arg1Of know,important
R7334 T13623 T13622 arg1Of know,to
R7335 T13624 T13623 arg2Of which,know
R7336 T13627 T13624 arg1Of pathways,which
R7337 T13627 T13625 arg1Of pathways,signal
R7338 T13627 T13626 arg1Of pathways,transduction
R7339 T13627 T13628 arg1Of pathways,were
R7340 T13627 T13629 arg2Of pathways,involved
R7341 T13629 T13628 arg2Of involved,were
R7342 T13631 T13630 arg2Of illustrated,As
R7343 T13631 T13632 arg1Of illustrated,in
R7344 T13633 T13632 arg2Of Fig.,in
R7345 T13633 T13634 arg1Of Fig.,3
R7346 T13638 T13636 arg1Of decrease,an
R7347 T13638 T13637 arg1Of decrease,significant
R7348 T13638 T13639 arg1Of decrease,in
R7349 T13638 T13643 arg1Of decrease,was
R7350 T13638 T13644 arg2Of decrease,observed
R7351 T13642 T13639 arg2Of production,in
R7352 T13642 T13640 arg1Of production,anti-CD3-induced
R7353 T13642 T13641 arg1Of production,IL-17
R7354 T13644 T13630 arg1Of observed,As
R7355 T13644 T13635 arg1Of observed,","
R7356 T13644 T13643 arg2Of observed,was
R7357 T13644 T13645 arg1Of observed,when
R7358 T13644 T13659 arg1Of observed,(
R7359 T13646 T13645 arg2Of co-incubated,when
R7360 T13646 T13647 arg1Of co-incubated,with
R7361 T13646 T13654 arg1Of co-incubated,in
R7362 T13649 T13648 arg1Of inhibitor,NF-κB
R7363 T13649 T13650 arg1Of inhibitor,","
R7364 T13650 T13652 arg1Of ",",and
R7365 T13651 T13650 arg2Of PDTC,","
R7366 T13652 T13647 arg2Of and,with
R7367 T13653 T13652 arg2Of dexamethasone,and
R7368 T13654 T13656 arg1Of in,with
R7369 T13655 T13654 arg2Of comparison,in
R7370 T13657 T13654 arg3Of anti-CD3,in
R7371 T13657 T13658 arg1Of anti-CD3,alone
R7372 T13660 T13661 arg1Of 38,±
R7373 T13661 T13663 arg1Of ±,and
R7374 T13662 T13661 arg2Of 5,±
R7375 T13664 T13665 arg1Of 54,±
R7376 T13665 T13663 arg2Of ±,and
R7377 T13666 T13665 arg2Of 11,±
R7378 T13670 T13660 arg1Of 19,38
R7379 T13670 T13662 arg1Of 19,5
R7380 T13670 T13664 arg1Of 19,54
R7381 T13670 T13666 arg1Of 19,11
R7382 T13670 T13667 arg1Of 19,versus
R7383 T13670 T13668 arg1Of 19,98
R7384 T13670 T13669 arg1Of 19,±
R7385 T13671 T13659 arg2Of pg/ml,(
R7386 T13671 T13670 arg1Of pg/ml,19
R7387 T13671 T13672 arg1Of pg/ml,","
R7388 T13671 T13673 arg1Of pg/ml,respectively
R7389 T13671 T13674 arg1Of pg/ml,;
R7390 T13675 T13674 arg2Of P,;
R7391 T13675 T13676 arg1Of P,<
R7392 T13675 T13677 arg1Of P,0.05
R7393 T13678 T13659 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T13847 204-209 Protein denotes IL-17
T13846 30-35 Protein denotes IL-17

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13946 321-324 http://www.uniprot.org/uniprot/P09693 denotes CD3
T13945 192-195 http://www.uniprot.org/uniprot/P09693 denotes CD3
T13943 321-324 http://www.uniprot.org/uniprot/P07766 denotes CD3
T13942 192-195 http://www.uniprot.org/uniprot/P07766 denotes CD3
T13940 321-324 http://www.uniprot.org/uniprot/P04234 denotes CD3
T13939 192-195 http://www.uniprot.org/uniprot/P04234 denotes CD3
T13937 321-324 http://www.uniprot.org/uniprot/P20963 denotes CD3
T13936 192-195 http://www.uniprot.org/uniprot/P20963 denotes CD3
T13930 204-209 http://www.uniprot.org/uniprot/Q16552 denotes IL-17
T13929 30-35 http://www.uniprot.org/uniprot/Q16552 denotes IL-17

GO-BP

Id Subject Object Predicate Lexical cue
T13558 90-118 http://purl.obolibrary.org/obo/GO_0035556 denotes signal transduction pathways
T13557 90-118 http://purl.obolibrary.org/obo/GO_0036499 denotes signal transduction pathways
T13556 90-118 http://purl.obolibrary.org/obo/GO_0036500 denotes signal transduction pathways
T13555 90-118 http://purl.obolibrary.org/obo/GO_0036498 denotes signal transduction pathways
T13554 97-109 http://purl.obolibrary.org/obo/GO_0009293 denotes transduction
T13552 90-109 http://purl.obolibrary.org/obo/GO_0007165 denotes signal transduction
T13550 90-96 http://purl.obolibrary.org/obo/GO_0023052 denotes signal
T13545 204-220 http://purl.obolibrary.org/obo/GO_0032620 denotes IL-17 production
T13544 30-46 http://purl.obolibrary.org/obo/GO_0032620 denotes IL-17 production
T13539 204-220 http://purl.obolibrary.org/obo/GO_0032660 denotes IL-17 production
T13538 30-46 http://purl.obolibrary.org/obo/GO_0032660 denotes IL-17 production

GO-MF

Id Subject Object Predicate Lexical cue
T13856 204-209 http://purl.obolibrary.org/obo/GO_0030367 denotes IL-17
T13855 30-35 http://purl.obolibrary.org/obo/GO_0030367 denotes IL-17

sentences

Id Subject Object Predicate Lexical cue
T13530 134-397 Sentence denotes As illustrated in Fig. 3, an significant decrease in anti-CD3-induced IL-17 production was observed when co-incubated with NF-κB inhibitor, PDTC and dexamethasone in comparison with anti-CD3 alone (38 ± 5 and 54 ± 11 versus 98 ± 19 pg/ml, respectively; P < 0.05).
T13529 0-133 Sentence denotes Having observed the increased IL-17 production in RA PBMC, it was important to know which signal transduction pathways were involved.
T130 0-133 Sentence denotes Having observed the increased IL-17 production in RA PBMC, it was important to know which signal transduction pathways were involved.
T131 134-397 Sentence denotes As illustrated in Fig. 3, an significant decrease in anti-CD3-induced IL-17 production was observed when co-incubated with NF-κB inhibitor, PDTC and dexamethasone in comparison with anti-CD3 alone (38 ± 5 and 54 ± 11 versus 98 ± 19 pg/ml, respectively; P < 0.05).

simple1

Id Subject Object Predicate Lexical cue
T13921 204-209 Protein denotes IL-17
T13920 30-35 Protein denotes IL-17

DLUT931

Id Subject Object Predicate Lexical cue
T13990 175-183 Negative_regulation denotes decrease
T13989 187-203 Positive_regulation denotes anti-CD3-induced
T13988 210-220 Gene_expression denotes production
T13987 20-29 Positive_regulation denotes increased
T13986 36-46 Gene_expression denotes production
T13977 204-209 Protein denotes IL-17
T13976 30-35 Protein denotes IL-17
R7608 T13976 T13986 themeOf IL-17,production
R7609 T13977 T13988 themeOf IL-17,production
R7616 T13986 T13987 themeOf production,increased
R7617 T13988 T13989 themeOf production,anti-CD3-induced
R7618 T13989 T13990 themeOf anti-CD3-induced,decrease

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T14367 16-58 Positive_regulation denotes the increased IL-17 production in RA PBMC,
T14361 155-233 Negative_regulation denotes . 3, an significant decrease in anti-CD3-induced IL-17 production was observed
T14359 0-58 Gene_expression denotes Having observed the increased IL-17 production in RA PBMC,
T14358 184-220 Gene_expression denotes in anti-CD3-induced IL-17 production
T14354 204-209 Protein denotes IL-17
T14352 187-203 Protein denotes anti-CD3-induced
T14338 50-57 Entity denotes RA PBMC
T14337 283-296 Entity denotes dexamethasone
T14329 30-35 Protein denotes IL-17
T14328 50-52 Protein denotes RA
T14327 152-155 Protein denotes Fig
T14322 316-324 Protein denotes anti-CD3
T14321 257-273 Entity denotes NF-κB inhibitor,
R7924 T14329 T14359 themeOf IL-17,"Having observed the increased IL-17 production in RA PBMC,"
R7930 T14354 T14358 themeOf IL-17,in anti-CD3-induced IL-17 production
R7932 T14358 T14361 themeOf in anti-CD3-induced IL-17 production,". 3, an significant decrease in anti-CD3-induced IL-17 production was observed"
R7933 T14359 T14367 themeOf "Having observed the increased IL-17 production in RA PBMC,","the increased IL-17 production in RA PBMC,"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14101 396-397 . denotes .
T14100 395-396 -RRB- denotes )
T14099 391-395 CD denotes 0.05
T14098 389-390 NNP denotes <
T14097 387-388 NNP denotes P
T14096 385-386 : denotes ;
T14095 373-385 RB denotes respectively
T14094 371-372 , denotes ,
T14093 366-371 NN denotes pg/ml
T14092 363-365 CD denotes 19
T14091 361-362 NN denotes ±
T14090 358-360 CD denotes 98
T14089 351-357 CC denotes versus
T14088 348-350 CD denotes 11
T14087 346-347 NN denotes ±
T14086 343-345 CD denotes 54
T14085 339-342 CC denotes and
T14084 337-338 CD denotes 5
T14083 335-336 NN denotes ±
T14082 332-334 CD denotes 38
T14081 331-332 -LRB- denotes (
T14080 325-330 RB denotes alone
T14079 316-324 JJ denotes anti-CD3
T14078 311-315 IN denotes with
T14077 300-310 NN denotes comparison
T14076 297-299 IN denotes in
T14075 283-296 NN denotes dexamethasone
T14074 279-282 CC denotes and
T14073 274-278 NNP denotes PDTC
T14072 272-273 , denotes ,
T14071 263-272 NN denotes inhibitor
T14070 257-262 JJ denotes NF-κB
T14069 252-256 IN denotes with
T14068 239-251 VBN denotes co-incubated
T14067 234-238 WRB denotes when
T14066 225-233 VBN denotes observed
T14065 221-224 VBD denotes was
T14064 210-220 NN denotes production
T14063 204-209 NN denotes IL-17
T14062 187-203 JJ denotes anti-CD3-induced
T14061 184-186 IN denotes in
T14060 175-183 NN denotes decrease
T14059 163-174 JJ denotes significant
T14058 160-162 DT denotes an
T14057 158-159 , denotes ,
T14056 157-158 CD denotes 3
T14055 152-156 NNP denotes Fig.
T14054 149-151 IN denotes in
T14053 137-148 VBN denotes illustrated
T14052 134-136 IN denotes As
T14051 132-133 . denotes .
T14050 124-132 VBN denotes involved
T14049 119-123 VBD denotes were
T14048 110-118 NNS denotes pathways
T14047 97-109 NN denotes transduction
T14046 90-96 NN denotes signal
T14045 84-89 WDT denotes which
T14044 79-83 VB denotes know
T14043 76-78 TO denotes to
T14042 66-75 JJ denotes important
T14041 62-65 VBD denotes was
T14040 59-61 PRP denotes it
T14039 57-58 , denotes ,
T14038 53-57 NNP denotes PBMC
T14037 50-52 NNP denotes RA
T14036 47-49 IN denotes in
T14035 36-46 NN denotes production
T14034 30-35 NN denotes IL-17
T14033 20-29 VBN denotes increased
T14032 16-19 DT denotes the
T14031 7-15 VBN denotes observed
T14030 0-6 VBG denotes Having
R7646 T14030 T14031 aux Having,observed
R7647 T14031 T14041 ccomp observed,was
R7648 T14032 T14035 det the,production
R7649 T14033 T14035 amod increased,production
R7650 T14034 T14035 compound IL-17,production
R7651 T14035 T14031 dobj production,observed
R7652 T14036 T14035 prep in,production
R7653 T14037 T14038 compound RA,PBMC
R7654 T14038 T14036 pobj PBMC,in
R7655 T14039 T14041 punct ",",was
R7656 T14040 T14041 nsubj it,was
R7657 T14041 T14041 ROOT was,was
R7658 T14042 T14041 acomp important,was
R7659 T14043 T14044 aux to,know
R7660 T14044 T14041 xcomp know,was
R7661 T14045 T14046 nsubj which,signal
R7662 T14046 T14048 nmod signal,pathways
R7663 T14047 T14048 compound transduction,pathways
R7664 T14048 T14050 nsubjpass pathways,involved
R7665 T14049 T14050 auxpass were,involved
R7666 T14050 T14044 ccomp involved,know
R7667 T14051 T14041 punct .,was
R7668 T14052 T14053 mark As,illustrated
R7669 T14053 T14066 advcl illustrated,observed
R7670 T14054 T14053 prep in,illustrated
R7671 T14055 T14054 pobj Fig.,in
R7672 T14056 T14055 nummod 3,Fig.
R7673 T14057 T14055 punct ",",Fig.
R7674 T14058 T14060 det an,decrease
R7675 T14059 T14060 amod significant,decrease
R7676 T14060 T14066 nsubjpass decrease,observed
R7677 T14061 T14060 prep in,decrease
R7678 T14062 T14064 amod anti-CD3-induced,production
R7679 T14063 T14064 compound IL-17,production
R7680 T14064 T14061 pobj production,in
R7681 T14065 T14066 auxpass was,observed
R7682 T14066 T14066 ROOT observed,observed
R7683 T14067 T14068 advmod when,co-incubated
R7684 T14068 T14066 advcl co-incubated,observed
R7685 T14069 T14068 prep with,co-incubated
R7686 T14070 T14071 amod NF-κB,inhibitor
R7687 T14071 T14069 pobj inhibitor,with
R7688 T14072 T14071 punct ",",inhibitor
R7689 T14073 T14071 conj PDTC,inhibitor
R7690 T14074 T14073 cc and,PDTC
R7691 T14075 T14073 conj dexamethasone,PDTC
R7692 T14076 T14068 prep in,co-incubated
R7693 T14077 T14076 pobj comparison,in
R7694 T14078 T14077 prep with,comparison
R7695 T14079 T14078 pobj anti-CD3,with
R7696 T14080 T14079 advmod alone,anti-CD3
R7697 T14081 T14083 punct (,±
R7698 T14082 T14083 nummod 38,±
R7699 T14083 T14091 nmod ±,±
R7700 T14084 T14083 nummod 5,±
R7701 T14085 T14083 cc and,±
R7702 T14086 T14087 nummod 54,±
R7703 T14087 T14083 conj ±,±
R7704 T14088 T14091 nummod 11,±
R7705 T14089 T14088 cc versus,11
R7706 T14090 T14088 conj 98,11
R7707 T14091 T14079 dep ±,anti-CD3
R7708 T14092 T14093 nummod 19,pg/ml
R7709 T14093 T14091 appos pg/ml,±
R7710 T14094 T14093 punct ",",pg/ml
R7711 T14095 T14091 conj respectively,±
R7712 T14096 T14099 punct ;,0.05
R7713 T14097 T14098 compound P,<
R7714 T14098 T14099 compound <,0.05
R7715 T14099 T14066 npadvmod 0.05,observed
R7716 T14100 T14099 punct ),0.05
R7717 T14101 T14066 punct .,observed

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13884 263-272 Negative_regulation denotes inhibitor
T13883 316-324 Protein denotes anti-CD3
T13882 257-262 Protein denotes NF-κB
T13881 192-195 Protein denotes CD3
T13880 152-155 Protein denotes Fig
R7559 T13882 T13884 themeOf NF-κB,inhibitor

testone

Id Subject Object Predicate Lexical cue
T13317 210-220 Gene_expression denotes production
T13316 196-203 Positive_regulation denotes induced
T13315 175-183 Negative_regulation denotes decrease
T13314 36-46 Gene_expression denotes production
T13313 20-29 Positive_regulation denotes increased
T13304 204-209 Protein denotes IL-17
T13303 30-35 Protein denotes IL-17
R7253 T13303 T13314 themeOf IL-17,production
R7254 T13304 T13317 themeOf IL-17,production
R7261 T13314 T13313 themeOf production,increased
R7262 T13316 T13315 themeOf induced,decrease
R7263 T13317 T13316 themeOf production,induced