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PMC:1064895 / 14227-14539 JSONTXT

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biosemtest

Id Subject Object Predicate Lexical cue
T10163 253-261 UMLS/C0017861 denotes ol, 1 mg
T10160 300-302 UMLS/C0439212 denotes po
T10159 88-90 UMLS/C0439212 denotes 00
T10156 271-274 UP/P02769 denotes .2%
T10155 4-20 UMLS/C1518434 denotes ear extracts (2
T10154 289-292 UMLS/C1419038 denotes d 5
T10148 152-159 UMLS/C0243122 denotes g buffe
T10134 73-83 UMLS/C0012893 denotes robes (10
T10132 271-274 UMLS/C0487992 denotes .2%
T10130 160-166 UMLS/C0006353 denotes consi
T10125 253-261 UMLS/C0768477 denotes ol, 1 mg
T10120 300-302 UMLS/C0694637 denotes po
T10119 88-90 UMLS/C0694637 denotes 00
T10112 45-54 UMLS/C1439852 denotes ated with
T10109 152-159 UMLS/C1689898 denotes g buffe
T10107 112-118 UMLS/C0456693 denotes n at r
T10103 289-292 UMLS/C1412528 denotes d 5
T10102 281-288 UMLS/C0068940 denotes t P40 a
T10098 197-199 UMLS/C0020283 denotes ,
T10094 289-292 UMLS/C0050854 denotes d 5
T10093 112-118 UMLS/C1442458 denotes n at r
T10089 197-199 UMLS/C1304686 denotes ,
T10087 289-292 UP/P24653 denotes d 5
T10085 60-72 UMLS/C2347885 denotes labeled DNA
T10083 244-248 UMLS/C0558745 denotes 5% g
T10079 289-292 UP/Q9WU34 denotes d 5
T10076 271-274 UMLS/C0005902 denotes .2%
T10069 197-199 UMLS/C0031526 denotes ,
T10066 197-199 UMLS/C2363150 denotes ,
T10062 60-72 UMLS/C1527121 denotes labeled DNA
T10059 197-199 UMLS/C0450409 denotes ,
T10057 197-199 UMLS/C0450408 denotes ,
T10055 197-199 UMLS/C0450407 denotes ,
T10051 271-274 UMLS/C0036774 denotes .2%
T10047 289-292 UMLS/C1334127 denotes d 5
T10046 271-274 UMLS/C1511233 denotes .2%
T10036 31-38 UMLS/C0033684 denotes in) wer
T10035 122-138 UMLS/C2348236 denotes temperature in 2
T10032 244-248 UMLS/C0013618 denotes 5% g
T10029 152-159 UMLS/C1167622 denotes g buffe
T10023 289-292 UMLS/C1456382 denotes d 5
T10021 221-235 UMLS/C0012789 denotes threitol, 0.5
T10020 152-159 UMLS/C1145667 denotes g buffe
T10016 152-159 UMLS/C2349209 denotes g buffe
T10015 289-292 UP/P25695 denotes d 5
T9998 60-72 UMLS/C0597354 denotes labeled DNA

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10346 310-311 -RRB- denotes )
T10345 305-310 NN denotes dI-dC
T10344 304-305 -LRB- denotes (
T10343 300-304 NN denotes poly
T10342 294-299 NN denotes ng/μl
T10341 291-293 CD denotes 50
T10340 287-290 CC denotes and
T10339 283-286 NN denotes P40
T10338 275-282 NN denotes Nonidet
T10337 273-274 NN denotes %
T10336 270-273 CD denotes 0.2
T10335 268-269 -COMMA- denotes ,
T10334 265-268 NN denotes BSA
T10333 259-264 NN denotes mg/ml
T10332 257-258 CD denotes 1
T10331 255-256 -COMMA- denotes ,
T10330 247-255 NN denotes glycerol
T10329 245-246 NN denotes %
T10328 244-245 CD denotes 5
T10327 242-243 -COMMA- denotes ,
T10326 238-242 NN denotes EDTA
T10325 235-237 NN denotes mM
T10324 231-234 CD denotes 0.5
T10323 229-230 -COMMA- denotes ,
T10322 215-229 NN denotes dithiothreitol
T10321 212-214 NN denotes mM
T10320 210-211 CD denotes 1
T10319 208-209 -COMMA- denotes ,
T10318 205-208 NN denotes KCl
T10317 202-204 NN denotes mM
T10316 199-201 CD denotes 50
T10315 197-198 -COMMA- denotes ,
T10314 194-197 CD denotes 7.9
T10313 191-193 NN denotes pH
T10312 189-190 -COMMA- denotes ,
T10311 181-189 NN denotes Tris-HCl
T10310 178-180 NN denotes mM
T10309 175-177 CD denotes 20
T10308 172-174 IN denotes of
T10307 161-171 VB denotes consisting
T10306 154-160 NN denotes buffer
T10305 146-153 NN denotes binding
T10304 143-145 IN denotes of
T10303 140-142 NN denotes μl
T10302 137-139 CD denotes 20
T10301 134-136 IN denotes in
T10300 122-133 NN denotes temperature
T10299 117-121 NN denotes room
T10298 114-116 IN denotes at
T10297 110-113 NN denotes min
T10296 107-109 CD denotes 30
T10295 103-106 IN denotes for
T10294 101-102 -RRB- denotes )
T10293 95-101 NN denotes c.p.m.
T10292 87-94 CD denotes 100,000
T10291 85-86 -COLON- denotes ;
T10290 83-85 NN denotes ng
T10289 80-82 CD denotes 10
T10288 79-80 -LRB- denotes (
T10287 72-78 NN denotes probes
T10286 68-71 NN denotes DNA
T10285 55-67 VB denotes radiolabeled
T10284 50-54 IN denotes with
T10283 40-49 VB denotes incubated
T10282 35-39 VB denotes were
T10281 33-34 -RRB- denotes )
T10280 26-33 NN denotes protein
T10279 23-25 IN denotes of
T10278 20-22 NN denotes μg
T10277 18-19 CD denotes 2
T10276 17-18 -LRB- denotes (
T10275 8-16 NN denotes extracts
T10274 0-7 JJ denotes Nuclear
R5405 T10275 T10274 arg1Of extracts,Nuclear
R5406 T10275 T10276 arg1Of extracts,(
R5407 T10275 T10282 arg1Of extracts,were
R5408 T10275 T10283 arg2Of extracts,incubated
R5409 T10278 T10276 arg2Of μg,(
R5410 T10278 T10277 arg1Of μg,2
R5411 T10278 T10279 arg1Of μg,of
R5412 T10280 T10279 arg2Of protein,of
R5413 T10281 T10276 arg3Of ),(
R5414 T10283 T10282 arg2Of incubated,were
R5415 T10283 T10284 arg1Of incubated,with
R5416 T10283 T10295 arg1Of incubated,for
R5417 T10287 T10284 arg2Of probes,with
R5418 T10287 T10285 arg2Of probes,radiolabeled
R5419 T10287 T10286 arg1Of probes,DNA
R5420 T10287 T10288 arg1Of probes,(
R5421 T10290 T10289 arg1Of ng,10
R5422 T10290 T10291 arg1Of ng,;
R5423 T10291 T10288 arg2Of ;,(
R5424 T10293 T10291 arg2Of c.p.m.,;
R5425 T10293 T10292 arg1Of c.p.m.,"100,000"
R5426 T10294 T10288 arg3Of ),(
R5427 T10297 T10295 arg2Of min,for
R5428 T10297 T10296 arg1Of min,30
R5429 T10297 T10298 arg1Of min,at
R5430 T10297 T10301 arg1Of min,in
R5431 T10297 T10307 arg1Of min,consisting
R5432 T10297 T10323 arg1Of min,","
R5433 T10300 T10298 arg2Of temperature,at
R5434 T10300 T10299 arg1Of temperature,room
R5435 T10303 T10301 arg2Of μl,in
R5436 T10303 T10302 arg1Of μl,20
R5437 T10303 T10304 arg1Of μl,of
R5438 T10306 T10304 arg2Of buffer,of
R5439 T10306 T10305 arg1Of buffer,binding
R5440 T10307 T10308 arg1Of consisting,of
R5441 T10309 T10310 arg1Of 20,mM
R5442 T10311 T10309 arg1Of Tris-HCl,20
R5443 T10311 T10312 arg1Of Tris-HCl,","
R5444 T10312 T10315 arg1Of ",",","
R5445 T10313 T10312 arg2Of pH,","
R5446 T10313 T10314 arg1Of pH,7.9
R5447 T10315 T10319 arg1Of ",",","
R5448 T10316 T10317 arg1Of 50,mM
R5449 T10318 T10315 arg2Of KCl,","
R5450 T10318 T10316 arg1Of KCl,50
R5451 T10319 T10308 arg2Of ",",of
R5452 T10320 T10321 arg1Of 1,mM
R5453 T10322 T10319 arg2Of dithiothreitol,","
R5454 T10322 T10320 arg1Of dithiothreitol,1
R5455 T10324 T10325 arg1Of 0.5,mM
R5456 T10326 T10324 arg1Of EDTA,0.5
R5457 T10326 T10327 arg1Of EDTA,","
R5458 T10327 T10331 arg1Of ",",","
R5459 T10328 T10329 arg1Of 5,%
R5460 T10330 T10327 arg2Of glycerol,","
R5461 T10330 T10328 arg1Of glycerol,5
R5462 T10331 T10335 arg1Of ",",","
R5463 T10334 T10331 arg2Of BSA,","
R5464 T10334 T10332 arg1Of BSA,1
R5465 T10334 T10333 arg1Of BSA,mg/ml
R5466 T10335 T10340 arg1Of ",",and
R5467 T10336 T10337 arg1Of 0.2,%
R5468 T10339 T10335 arg2Of P40,","
R5469 T10339 T10336 arg1Of P40,0.2
R5470 T10339 T10338 arg1Of P40,Nonidet
R5471 T10340 T10323 arg2Of and,","
R5472 T10343 T10340 arg2Of poly,and
R5473 T10343 T10341 arg1Of poly,50
R5474 T10343 T10342 arg1Of poly,ng/μl
R5475 T10343 T10344 arg1Of poly,(
R5476 T10345 T10344 arg2Of dI-dC,(
R5477 T10346 T10344 arg3Of ),(

GO-MF

Id Subject Object Predicate Lexical cue
T10416 146-153 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T10181 0-312 Sentence denotes Nuclear extracts (2 μg of protein) were incubated with radiolabeled DNA probes (10 ng; 100,000 c.p.m.) for 30 min at room temperature in 20 μl of binding buffer consisting of 20 mM Tris-HCl, pH 7.9, 50 mM KCl, 1 mM dithiothreitol, 0.5 mM EDTA, 5% glycerol, 1 mg/ml BSA, 0.2% Nonidet P40 and 50 ng/μl poly(dI-dC).
T104 0-312 Sentence denotes Nuclear extracts (2 μg of protein) were incubated with radiolabeled DNA probes (10 ng; 100,000 c.p.m.) for 30 min at room temperature in 20 μl of binding buffer consisting of 20 mM Tris-HCl, pH 7.9, 50 mM KCl, 1 mM dithiothreitol, 0.5 mM EDTA, 5% glycerol, 1 mg/ml BSA, 0.2% Nonidet P40 and 50 ng/μl poly(dI-dC).

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10742 247-256 Entity denotes glycerol,
T10741 270-286 Entity denotes 0.2% Nonidet P40
T10734 0-16 Entity denotes Nuclear extracts
T10732 175-190 Entity denotes 20 mM Tris-HCl,
T10730 210-243 Entity denotes 1 mM dithiothreitol, 0.5 mM EDTA,
T10727 231-242 Entity denotes 0.5 mM EDTA
T10726 68-71 Entity denotes DNA
T10724 259-269 Protein denotes mg/ml BSA,
T10717 80-101 Protein denotes 10 ng; 100,000 c.p.m.
T10714 199-208 Entity denotes 50 mM KCl
T10712 175-190 Entity denotes 20 mM Tris-HCl,
T10702 26-33 Protein denotes protein

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10625 311-312 . denotes .
T10624 310-311 -RRB- denotes )
T10623 305-310 JJ denotes dI-dC
T10622 304-305 -LRB- denotes (
T10621 300-304 NN denotes poly
T10620 297-299 NN denotes μl
T10619 296-297 NN denotes /
T10618 294-296 NN denotes ng
T10617 291-293 CD denotes 50
T10616 287-290 CC denotes and
T10615 283-286 NNP denotes P40
T10614 275-282 NNP denotes Nonidet
T10613 273-274 NN denotes %
T10612 270-273 CD denotes 0.2
T10611 268-269 , denotes ,
T10610 265-268 NNP denotes BSA
T10609 259-264 NN denotes mg/ml
T10608 257-258 CD denotes 1
T10607 255-256 , denotes ,
T10606 247-255 NN denotes glycerol
T10605 245-246 NN denotes %
T10604 244-245 CD denotes 5
T10603 242-243 , denotes ,
T10602 238-242 NNP denotes EDTA
T10601 235-237 NNP denotes mM
T10600 231-234 CD denotes 0.5
T10599 229-230 , denotes ,
T10598 215-229 NN denotes dithiothreitol
T10597 212-214 NNP denotes mM
T10596 210-211 CD denotes 1
T10595 208-209 , denotes ,
T10594 205-208 NNP denotes KCl
T10593 202-204 NNP denotes mM
T10592 199-201 CD denotes 50
T10591 197-198 , denotes ,
T10590 194-197 CD denotes 7.9
T10589 191-193 NNP denotes pH
T10588 189-190 , denotes ,
T10587 181-189 NNP denotes Tris-HCl
T10586 178-180 NNP denotes mM
T10585 175-177 CD denotes 20
T10584 172-174 IN denotes of
T10583 161-171 VBG denotes consisting
T10582 154-160 NN denotes buffer
T10581 146-153 JJ denotes binding
T10580 143-145 IN denotes of
T10579 140-142 NN denotes μl
T10578 137-139 CD denotes 20
T10577 134-136 IN denotes in
T10576 122-133 NN denotes temperature
T10575 117-121 NN denotes room
T10574 114-116 IN denotes at
T10573 110-113 NN denotes min
T10572 107-109 CD denotes 30
T10571 103-106 IN denotes for
T10570 101-102 -RRB- denotes )
T10569 95-101 NN denotes c.p.m.
T10568 87-94 CD denotes 100,000
T10567 85-86 : denotes ;
T10566 83-85 NN denotes ng
T10565 80-82 CD denotes 10
T10564 79-80 -LRB- denotes (
T10563 72-78 NNS denotes probes
T10562 68-71 NNP denotes DNA
T10561 55-67 JJ denotes radiolabeled
T10560 50-54 IN denotes with
T10559 40-49 VBN denotes incubated
T10558 35-39 VBD denotes were
T10557 33-34 -RRB- denotes )
T10556 26-33 NN denotes protein
T10555 23-25 IN denotes of
T10554 20-22 NN denotes μg
T10553 18-19 CD denotes 2
T10552 17-18 -LRB- denotes (
T10551 8-16 NNS denotes extracts
T10550 0-7 NNP denotes Nuclear
R5637 T10550 T10551 compound Nuclear,extracts
R5638 T10551 T10559 nsubjpass extracts,incubated
R5639 T10552 T10554 punct (,μg
R5640 T10553 T10554 nummod 2,μg
R5641 T10554 T10551 appos μg,extracts
R5642 T10555 T10554 prep of,μg
R5643 T10556 T10555 pobj protein,of
R5644 T10557 T10554 punct ),μg
R5645 T10558 T10559 auxpass were,incubated
R5646 T10559 T10559 ROOT incubated,incubated
R5647 T10560 T10559 prep with,incubated
R5648 T10561 T10563 amod radiolabeled,probes
R5649 T10562 T10563 compound DNA,probes
R5650 T10563 T10560 pobj probes,with
R5651 T10564 T10566 punct (,ng
R5652 T10565 T10566 nummod 10,ng
R5653 T10566 T10563 appos ng,probes
R5654 T10567 T10566 punct ;,ng
R5655 T10568 T10569 nummod "100,000",c.p.m.
R5656 T10569 T10566 appos c.p.m.,ng
R5657 T10570 T10566 punct ),ng
R5658 T10571 T10566 prep for,ng
R5659 T10572 T10573 nummod 30,min
R5660 T10573 T10571 pobj min,for
R5661 T10574 T10573 prep at,min
R5662 T10575 T10576 compound room,temperature
R5663 T10576 T10574 pobj temperature,at
R5664 T10577 T10573 prep in,min
R5665 T10578 T10579 nummod 20,μl
R5666 T10579 T10577 pobj μl,in
R5667 T10580 T10579 prep of,μl
R5668 T10581 T10582 amod binding,buffer
R5669 T10582 T10580 pobj buffer,of
R5670 T10583 T10582 acl consisting,buffer
R5671 T10584 T10583 prep of,consisting
R5672 T10585 T10587 nummod 20,Tris-HCl
R5673 T10586 T10587 compound mM,Tris-HCl
R5674 T10587 T10584 pobj Tris-HCl,of
R5675 T10588 T10587 punct ",",Tris-HCl
R5676 T10589 T10587 appos pH,Tris-HCl
R5677 T10590 T10589 nummod 7.9,pH
R5678 T10591 T10589 punct ",",pH
R5679 T10592 T10594 nummod 50,KCl
R5680 T10593 T10594 compound mM,KCl
R5681 T10594 T10587 appos KCl,Tris-HCl
R5682 T10595 T10594 punct ",",KCl
R5683 T10596 T10598 nummod 1,dithiothreitol
R5684 T10597 T10598 compound mM,dithiothreitol
R5685 T10598 T10594 appos dithiothreitol,KCl
R5686 T10599 T10598 punct ",",dithiothreitol
R5687 T10600 T10602 nummod 0.5,EDTA
R5688 T10601 T10602 compound mM,EDTA
R5689 T10602 T10598 appos EDTA,dithiothreitol
R5690 T10603 T10602 punct ",",EDTA
R5691 T10604 T10605 nummod 5,%
R5692 T10605 T10606 compound %,glycerol
R5693 T10606 T10602 appos glycerol,EDTA
R5694 T10607 T10606 punct ",",glycerol
R5695 T10608 T10609 nummod 1,mg/ml
R5696 T10609 T10610 compound mg/ml,BSA
R5697 T10610 T10602 appos BSA,EDTA
R5698 T10611 T10602 punct ",",EDTA
R5699 T10612 T10613 nummod 0.2,%
R5700 T10613 T10615 compound %,P40
R5701 T10614 T10615 compound Nonidet,P40
R5702 T10615 T10602 conj P40,EDTA
R5703 T10616 T10615 cc and,P40
R5704 T10617 T10618 nummod 50,ng
R5705 T10618 T10621 compound ng,poly
R5706 T10619 T10621 compound /,poly
R5707 T10620 T10621 compound μl,poly
R5708 T10621 T10615 conj poly,P40
R5709 T10622 T10623 punct (,dI-dC
R5710 T10623 T10621 parataxis dI-dC,poly
R5711 T10624 T10623 punct ),dI-dC
R5712 T10625 T10559 punct .,incubated