PMC:1064895 / 12008-12233
Annnotations
test3
{"project":"test3","denotations":[{"id":"T8213","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T8212","span":{"begin":168,"end":173},"obj":"Protein"},{"id":"T8201","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T8200","span":{"begin":168,"end":173},"obj":"Protein"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
BioNLP16_Messiy
{"project":"BioNLP16_Messiy","denotations":[{"id":"T8734","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T8733","span":{"begin":168,"end":173},"obj":"Protein"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
BioNLP16_DUT
{"project":"BioNLP16_DUT","denotations":[{"id":"T9174","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T9173","span":{"begin":168,"end":173},"obj":"Protein"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
biosemtest
{"project":"biosemtest","denotations":[{"id":"T8582","span":{"begin":8,"end":17},"obj":"UMLS/C0443286"},{"id":"T8518","span":{"begin":23,"end":32},"obj":"UMLS/C1709694"},{"id":"T8490","span":{"begin":209,"end":212},"obj":"UMLS/C0702093"},{"id":"T8489","span":{"begin":148,"end":151},"obj":"UMLS/C0702093"},{"id":"T8473","span":{"begin":188,"end":193},"obj":"UMLS/C0384648"},{"id":"T8432","span":{"begin":188,"end":193},"obj":"UMLS/C1623218"},{"id":"T8421","span":{"begin":23,"end":32},"obj":"UMLS/C1522240"},{"id":"T8401","span":{"begin":23,"end":32},"obj":"UMLS/C1551390"},{"id":"T8397","span":{"begin":188,"end":193},"obj":"UMLS/C1825592"},{"id":"T8385","span":{"begin":104,"end":110},"obj":"UMLS/C1511572"},{"id":"T8383","span":{"begin":42,"end":56},"obj":"UMLS/C1611676"},{"id":"T8380","span":{"begin":195,"end":203},"obj":"UMLS/C0332283"},{"id":"T8377","span":{"begin":195,"end":203},"obj":"UMLS/C0332282"},{"id":"T8295","span":{"begin":23,"end":32},"obj":"UMLS/C1550044"},{"id":"T8274","span":{"begin":188,"end":193},"obj":"UMLS/C1522571"},{"id":"T8618","span":{"begin":123,"end":135},"obj":"UMLS/C0301642"},{"id":"T8615","span":{"begin":8,"end":17},"obj":"UMLS/C1114821"},{"id":"T8609","span":{"begin":23,"end":32},"obj":"UMLS/C1184743"},{"id":"T8593","span":{"begin":209,"end":212},"obj":"UMLS/C0439232"},{"id":"T8592","span":{"begin":148,"end":151},"obj":"UMLS/C0439232"},{"id":"T8588","span":{"begin":38,"end":41},"obj":"UMLS/C0012854"},{"id":"T8249","span":{"begin":91,"end":94},"obj":"UMLS/C0041703"},{"id":"T8235","span":{"begin":178,"end":183},"obj":"UMLS/C1414968"},{"id":"T8349","span":{"begin":195,"end":203},"obj":"UMLS/C1719822"},{"id":"T8340","span":{"begin":38,"end":41},"obj":"UMLS/C1325786"},{"id":"T8312","span":{"begin":209,"end":212},"obj":"UMLS/C1552937"},{"id":"T8311","span":{"begin":148,"end":151},"obj":"UMLS/C1552937"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
bionlp-st-ge-2016-test-proteins
{"project":"bionlp-st-ge-2016-test-proteins","denotations":[{"id":"T8660","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T8659","span":{"begin":168,"end":173},"obj":"Protein"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
bionlp-st-ge-2016-uniprot
{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T8723","span":{"begin":168,"end":173},"obj":"http://www.uniprot.org/uniprot/P04406"},{"id":"T8713","span":{"begin":178,"end":183},"obj":"http://www.uniprot.org/uniprot/Q16552"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
GO-MF
{"project":"GO-MF","denotations":[{"id":"T8668","span":{"begin":178,"end":183},"obj":"http://purl.obolibrary.org/obo/GO_0030367"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
sentences
{"project":"sentences","denotations":[{"id":"T89","span":{"begin":0,"end":225},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
simple1
{"project":"simple1","denotations":[{"id":"T8705","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T8704","span":{"begin":168,"end":173},"obj":"Protein"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
DLUT931
{"project":"DLUT931","denotations":[{"id":"T8746","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T8745","span":{"begin":168,"end":173},"obj":"Protein"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
bionlp-st-ge-2016-test-ihmc
{"project":"bionlp-st-ge-2016-test-ihmc","denotations":[{"id":"T9125","span":{"begin":178,"end":184},"obj":"Protein"},{"id":"T9154","span":{"begin":168,"end":173},"obj":"Protein"},{"id":"T9136","span":{"begin":70,"end":87},"obj":"Protein"},{"id":"T9134","span":{"begin":30,"end":33},"obj":"Entity"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
bionlp-st-ge-2016-spacy-parsed
{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T9049","span":{"begin":223,"end":225},"obj":"NNP"},{"id":"T9048","span":{"begin":222,"end":223},"obj":"CD"},{"id":"T9047","span":{"begin":220,"end":222},"obj":"CD"},{"id":"T9046","span":{"begin":217,"end":219},"obj":"IN"},{"id":"T9045","span":{"begin":206,"end":216},"obj":"NN"},{"id":"T9044","span":{"begin":203,"end":205},"obj":"IN"},{"id":"T9043","span":{"begin":199,"end":202},"obj":"NN"},{"id":"T9042","span":{"begin":197,"end":198},"obj":"CD"},{"id":"T9041","span":{"begin":194,"end":196},"obj":"IN"},{"id":"T9040","span":{"begin":185,"end":193},"obj":"VBN"},{"id":"T9039","span":{"begin":183,"end":184},"obj":","},{"id":"T9038","span":{"begin":178,"end":183},"obj":"NNP"},{"id":"T9037","span":{"begin":174,"end":177},"obj":"CC"},{"id":"T9036","span":{"begin":168,"end":173},"obj":"NNP"},{"id":"T9035","span":{"begin":164,"end":167},"obj":"IN"},{"id":"T9034","span":{"begin":162,"end":163},"obj":"NNP"},{"id":"T9033","span":{"begin":161,"end":162},"obj":"CD"},{"id":"T9032","span":{"begin":159,"end":161},"obj":"CD"},{"id":"T9031","span":{"begin":156,"end":158},"obj":"IN"},{"id":"T9030","span":{"begin":146,"end":155},"obj":"VBG"},{"id":"T9029","span":{"begin":143,"end":145},"obj":"IN"},{"id":"T9028","span":{"begin":139,"end":142},"obj":"NN"},{"id":"T9027","span":{"begin":137,"end":138},"obj":"CD"},{"id":"T9026","span":{"begin":135,"end":136},"obj":","},{"id":"T9025","span":{"begin":134,"end":135},"obj":"NNP"},{"id":"T9024","span":{"begin":133,"end":134},"obj":"CD"},{"id":"T9023","span":{"begin":131,"end":133},"obj":"CD"},{"id":"T9022","span":{"begin":128,"end":130},"obj":"IN"},{"id":"T9021","span":{"begin":115,"end":127},"obj":"NN"},{"id":"T9020","span":{"begin":112,"end":114},"obj":"IN"},{"id":"T9019","span":{"begin":110,"end":111},"obj":"PRP"},{"id":"T9018","span":{"begin":107,"end":109},"obj":"CD"},{"id":"T9017","span":{"begin":103,"end":106},"obj":"IN"},{"id":"T9016","span":{"begin":96,"end":102},"obj":"NNS"},{"id":"T9015","span":{"begin":88,"end":95},"obj":"IN"},{"id":"T9014","span":{"begin":86,"end":87},"obj":"-RRB-"},{"id":"T9013","span":{"begin":83,"end":86},"obj":"NNP"},{"id":"T9012","span":{"begin":81,"end":82},"obj":","},{"id":"T9011","span":{"begin":79,"end":81},"obj":"NNP"},{"id":"T9010","span":{"begin":77,"end":78},"obj":","},{"id":"T9009","span":{"begin":70,"end":77},"obj":"NNP"},{"id":"T9008","span":{"begin":68,"end":69},"obj":","},{"id":"T9007","span":{"begin":63,"end":68},"obj":"NNP"},{"id":"T9006","span":{"begin":50,"end":62},"obj":"NNP"},{"id":"T9005","span":{"begin":49,"end":50},"obj":"-LRB-"},{"id":"T9004","span":{"begin":42,"end":48},"obj":"NN"},{"id":"T9003","span":{"begin":34,"end":41},"obj":"JJ"},{"id":"T9002","span":{"begin":30,"end":33},"obj":"NNP"},{"id":"T9001","span":{"begin":28,"end":29},"obj":"DT"},{"id":"T9000","span":{"begin":25,"end":27},"obj":"IN"},{"id":"T8999","span":{"begin":15,"end":24},"obj":"VBN"},{"id":"T8998","span":{"begin":10,"end":14},"obj":"VBD"},{"id":"T8997","span":{"begin":0,"end":9},"obj":"NNS"}],"relations":[{"id":"R4718","pred":"nsubjpass","subj":"T8997","obj":"T8999"},{"id":"R4740","pred":"dep","subj":"T9019","obj":"T8999"},{"id":"R4741","pred":"prep","subj":"T9020","obj":"T9019"},{"id":"R4742","pred":"pobj","subj":"T9021","obj":"T9020"},{"id":"R4743","pred":"prep","subj":"T9022","obj":"T8999"},{"id":"R4744","pred":"nummod","subj":"T9023","obj":"T9024"},{"id":"R4745","pred":"nummod","subj":"T9024","obj":"T9025"},{"id":"R4746","pred":"pobj","subj":"T9025","obj":"T9022"},{"id":"R4747","pred":"punct","subj":"T9026","obj":"T9025"},{"id":"R4748","pred":"nummod","subj":"T9027","obj":"T9028"},{"id":"R4749","pred":"nsubj","subj":"T9028","obj":"T9040"},{"id":"R4750","pred":"prep","subj":"T9029","obj":"T9028"},{"id":"R4751","pred":"pcomp","subj":"T9030","obj":"T9029"},{"id":"R4752","pred":"prep","subj":"T9031","obj":"T9030"},{"id":"R4753","pred":"nummod","subj":"T9032","obj":"T9034"},{"id":"R4754","pred":"nummod","subj":"T9033","obj":"T9034"},{"id":"R4755","pred":"pobj","subj":"T9034","obj":"T9031"},{"id":"R4756","pred":"prep","subj":"T9035","obj":"T9034"},{"id":"R4757","pred":"pobj","subj":"T9036","obj":"T9035"},{"id":"R4758","pred":"cc","subj":"T9037","obj":"T9036"},{"id":"R4759","pred":"conj","subj":"T9038","obj":"T9036"},{"id":"R4760","pred":"punct","subj":"T9039","obj":"T9034"},{"id":"R4761","pred":"advcl","subj":"T9040","obj":"T8999"},{"id":"R4762","pred":"prep","subj":"T9041","obj":"T9040"},{"id":"R4763","pred":"nummod","subj":"T9042","obj":"T9043"},{"id":"R4764","pred":"pobj","subj":"T9043","obj":"T9041"},{"id":"R4765","pred":"prep","subj":"T9044","obj":"T9043"},{"id":"R4766","pred":"pobj","subj":"T9045","obj":"T9044"},{"id":"R4767","pred":"prep","subj":"T9046","obj":"T9043"},{"id":"R4768","pred":"nummod","subj":"T9047","obj":"T9048"},{"id":"R4719","pred":"auxpass","subj":"T8998","obj":"T8999"},{"id":"R4721","pred":"prep","subj":"T9000","obj":"T8999"},{"id":"R4722","pred":"det","subj":"T9001","obj":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were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
bionlp-st-ge-2016-test-tees
{"project":"bionlp-st-ge-2016-test-tees","denotations":[{"id":"T8693","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T8692","span":{"begin":168,"end":173},"obj":"Protein"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}
testone
{"project":"testone","denotations":[{"id":"T8188","span":{"begin":178,"end":183},"obj":"Protein"},{"id":"T8187","span":{"begin":168,"end":173},"obj":"Protein"}],"text":"Reactions were processed in a DNA thermal cycler (Perkin-Elmer Cetus, Norwalk, CT, USA) through cycles for 30 s of denaturation at 94°C, 1 min of annealing at 56°C for GAPDH and IL-17, followed by 1 min of elongation at 72°C."}