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PMC:1064873 / 6477-7010 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T2245 503-507 Protein denotes CD4+
T2244 467-477 Protein denotes SOCS3 mRNA
T2243 457-462 Protein denotes SOCS1
T2242 428-433 Protein denotes IL-10
T2241 403-408 Protein denotes STAT3
T2240 393-398 Protein denotes STAT1
T2239 369-374 Protein denotes IL-10
T2238 231-235 Protein denotes CD4+
T2237 89-93 Protein denotes CD28

2_test

Id Subject Object Predicate Lexical cue
15535835-10898505-4156883 113-115 10898505 denotes 24

biosemtest

Id Subject Object Predicate Lexical cue
T3110 100-117 UMLS/C0037080 denotes ing pathway [24],
T3088 338-342 UMLS/C0075747 denotes stim
T3087 95-99 UMLS/C0075747 denotes igna
T3029 24-30 UMLS/C0332206 denotes the a
T3025 258-264 UMLS/C1552596 denotes inhib
T3014 400-405 UP/P42229 denotes nd ST
T3006 68-76 UMLS/C1704632 denotes se by in
T2999 100-117 UMLS/C0086982 denotes ing pathway [24],
T2988 258-264 UMLS/C0439851 denotes inhib
T2987 258-264 UMLS/C1947931 denotes inhib
T2986 127-131 UMLS/C0205170 denotes s in
T2975 223-233 UMLS/C0683598 denotes ance of CD
T2974 435-440 UMLS/C0085295 denotes and t
T2973 376-381 UMLS/C0085295 denotes the i
T2972 6-11 UMLS/C0085295 denotes effic
T2938 416-431 UMLS/C0031715 denotes rylation by IL-
T2928 68-76 UMLS/C0871261 denotes se by in
T2918 338-342 UMLS/C1332709 denotes stim
T2917 95-99 UMLS/C1332709 denotes igna
T2902 223-233 UMLS/C0237834 denotes ance of CD
T2836 265-275 UMLS/C1628982 denotes tion in RA
T2821 410-415 UMLS/C1367307 denotes hosph
T2807 68-76 UMLS/C1706817 denotes se by in
T2773 410-415 UMLS/C0253050 denotes hosph
T2755 265-275 UMLS/C0021467 denotes tion in RA
T2751 265-275 UMLS/C0021469 denotes tion in RA
T2750 80-90 UMLS/C0021469 denotes ting the C
T2744 364-372 UMLS/C0150312 denotes e of IL-
T2723 43-51 UMLS/C0205369 denotes ic T-cel
T2703 488-504 UMLS/C0229664 denotes ral blood (PB) C
T2695 435-440 UMLS/C1149215 denotes and t
T2694 376-381 UMLS/C1149215 denotes the i
T2693 6-11 UMLS/C1149215 denotes effic
T2674 223-233 UMLS/C1522618 denotes ance of CD
T2671 286-298 UMLS/C1292732 denotes igated the p
T2662 400-405 UMLS/C1335872 denotes nd ST
T2657 450-460 UMLS/C0185117 denotes ion of SOC
T3232 180-204 UMLS/C0003315 denotes n-presenting cells. To e
T3230 253-257 UMLS/C0323983 denotes irec
T3225 303-313 UMLS/C1548180 denotes tion of IF
T3221 35-42 UMLS/C0003320 denotes n-speci
T3208 324-329 UMLS/C0231290 denotes D3 an
T3207 474-479 UMLS/C1426212 denotes RNA i
T3201 338-342 UMLS/C1426202 denotes stim
T3200 95-99 UMLS/C1426202 denotes igna
T3185 464-469 UMLS/C1426208 denotes nd SO
T3153 400-405 UP/P42224 denotes nd ST
T3142 330-333 UMLS/C2698592 denotes CD
T3136 168-176 UMLS/C1705273 denotes on of an
T3129 515-522 UMLS/C0039194 denotes from R
T3128 242-249 UMLS/C0039194 denotes s to th
T3127 52-58 UMLS/C0039194 denotes cytok
T3116 168-176 UMLS/C0542341 denotes on of an
T2877 43-51 UMLS/C1552740 denotes ic T-cel
T2870 387-396 UMLS/C0205263 denotes on of STA
T2841 387-396 UMLS/C1621983 denotes on of STA
T2602 435-440 UMLS/C1522550 denotes and t
T2601 376-381 UMLS/C1522550 denotes the i
T2600 6-11 UMLS/C1522550 denotes effic
T2589 324-329 UMLS/C0687676 denotes D3 an
T2588 435-440 UMLS/C1334098 denotes and t
T2587 376-381 UMLS/C1334098 denotes the i
T2586 6-11 UMLS/C1334098 denotes effic
T2572 59-67 UMLS/C1524094 denotes ne respo
T2546 364-372 UMLS/C0392148 denotes e of IL-
T2520 450-460 UMLS/C0017262 denotes ion of SOC
T2516 330-333 UMLS/C0108779 denotes CD
T2514 24-30 UMLS/C1706084 denotes the a
T2503 24-30 UMLS/C1533157 denotes the a
T2475 250-252 UMLS/C0319022 denotes s
T2474 206-208 UMLS/C0319022 denotes ci
T2464 24-30 UMLS/C0028778 denotes the a
T2459 480-484 UMLS/C0035696 denotes per
T2457 24-30 UMLS/C0233660 denotes the a
T2444 59-67 UMLS/C0079189 denotes ne respo

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T4779 357-365 NN denotes presence
T4778 353-356 DT denotes the
T4777 350-352 IN denotes in
T4776 336-349 NN denotes costimulation
T4775 331-335 NN denotes CD28
T4774 327-330 CC denotes and
T4773 323-326 NN denotes CD3
T4772 317-322 IN denotes after
T4771 311-316 NN denotes IFN-γ
T4770 308-310 IN denotes of
T4769 297-307 NN denotes production
T4768 293-296 DT denotes the
T4767 280-292 VB denotes investigated
T4766 277-279 PRP denotes we
T4765 275-276 -COMMA- denotes ,
T4764 273-275 NN denotes RA
T4763 270-272 IN denotes in
T4762 259-269 NN denotes inhibition
T4761 252-258 JJ denotes direct
T4760 247-251 DT denotes this
T4759 244-246 TO denotes to
T4758 238-243 NN denotes cells
T4757 236-237 NN denotes T
T4756 231-235 JJ denotes CD4+
T4755 228-230 IN denotes of
T4754 217-227 NN denotes resistance
T4753 213-216 DT denotes the
T4752 203-212 VB denotes elucidate
T4751 200-202 TO denotes To
T4750 193-198 NN denotes cells
T4749 174-192 JJ denotes antigen-presenting
T4748 171-173 IN denotes of
T4747 162-170 NN denotes function
T4746 158-161 DT denotes the
T4745 143-157 VB denotes downregulating
T4744 140-142 IN denotes by
T4743 129-139 RB denotes indirectly
T4742 126-128 IN denotes as
T4741 121-125 RB denotes well
T4740 118-120 RB denotes as
T4739 116-117 -COMMA- denotes ,
T4738 115-116 -RRB- denotes ]
T4737 113-115 CD denotes 24
T4736 112-113 -LRB- denotes [
T4735 104-111 NN denotes pathway
T4734 94-103 NN denotes signaling
T4733 89-93 NN denotes CD28
T4732 85-88 DT denotes the
T4731 74-84 VB denotes inhibiting
T4730 71-73 IN denotes by
T4729 62-70 NN denotes response
T4728 53-61 NN denotes cytokine
T4727 46-52 NN denotes T-cell
T4726 29-45 JJ denotes antigen-specific
T4725 25-28 DT denotes the
T4724 18-24 VB denotes blocks
T4723 6-17 RB denotes efficiently
T4722 0-5 NN denotes IL-10
T4812 524-532 NN denotes patients
T4811 521-523 NN denotes RA
T4810 516-520 IN denotes from
T4809 510-515 NN denotes cells
T4808 508-509 NN denotes T
T4807 503-507 JJ denotes CD4+
T4806 501-502 -RRB- denotes )
T4805 499-501 NN denotes PB
T4804 498-499 -LRB- denotes (
T4803 492-497 NN denotes blood
T4802 481-491 JJ denotes peripheral
T4801 478-480 IN denotes in
T4800 473-477 NN denotes mRNA
T4799 467-472 NN denotes SOCS3
T4798 463-466 CC denotes and
T4797 457-462 NN denotes SOCS1
T4796 454-456 IN denotes of
T4795 443-453 NN denotes expression
T4794 439-442 DT denotes the
T4793 435-438 CC denotes and
T4792 433-434 -COMMA- denotes ,
T4791 428-433 NN denotes IL-10
T4790 425-427 IN denotes by
T4789 409-424 NN denotes phosphorylation
T4788 403-408 NN denotes STAT3
T4787 399-402 CC denotes and
T4786 393-398 NN denotes STAT1
T4785 390-392 IN denotes of
T4784 380-389 NN denotes induction
T4783 376-379 DT denotes the
T4782 374-375 -COMMA- denotes ,
T4781 369-374 NN denotes IL-10
T4780 366-368 IN denotes of
R1813 T4729 T4724 arg2Of response,blocks
R1821 T4729 T4725 arg1Of response,the
R1828 T4729 T4726 arg1Of response,antigen-specific
R1829 T4729 T4727 arg1Of response,T-cell
R1830 T4729 T4728 arg1Of response,cytokine
R1833 T4730 T4742 arg1Of by,as
R1836 T4722 T4724 arg1Of IL-10,blocks
R1837 T4722 T4731 arg1Of IL-10,inhibiting
R1838 T4722 T4745 arg1Of IL-10,downregulating
R1839 T4731 T4730 arg2Of inhibiting,by
R1840 T4724 T4723 arg1Of blocks,efficiently
R1841 T4724 T4730 arg1Of blocks,by
R1842 T4724 T4744 arg1Of blocks,by
R1843 T4735 T4731 arg2Of pathway,inhibiting
R1844 T4735 T4732 arg1Of pathway,the
R1845 T4735 T4733 arg1Of pathway,CD28
R1846 T4735 T4734 arg1Of pathway,signaling
R1847 T4735 T4736 arg1Of pathway,[
R1848 T4737 T4736 arg2Of 24,[
R1850 T4738 T4736 arg3Of ],[
R1852 T4742 T4739 arg1Of as,","
R1855 T4742 T4740 arg1Of as,as
R1856 T4742 T4741 arg1Of as,well
R1857 T4744 T4742 arg2Of by,as
R1859 T4744 T4743 arg1Of by,indirectly
R1860 T4745 T4744 arg2Of downregulating,by
R1861 T4747 T4745 arg2Of function,downregulating
R1863 T4747 T4746 arg1Of function,the
R1864 T4747 T4748 arg1Of function,of
R1865 T4750 T4748 arg2Of cells,of
R1868 T4750 T4749 arg1Of cells,antigen-presenting
R1870 T4752 T4751 arg1Of elucidate,To
R1873 T4754 T4752 arg2Of resistance,elucidate
R1875 T4754 T4753 arg1Of resistance,the
R1876 T4754 T4755 arg1Of resistance,of
R1877 T4754 T4759 arg1Of resistance,to
R1879 T4758 T4755 arg2Of cells,of
R1883 T4758 T4756 arg1Of cells,CD4+
R1885 T4758 T4757 arg1Of cells,T
R1886 T4762 T4759 arg2Of inhibition,to
R1889 T4762 T4760 arg1Of inhibition,this
R1890 T4762 T4761 arg1Of inhibition,direct
R1891 T4762 T4763 arg1Of inhibition,in
R1893 T4764 T4763 arg2Of RA,in
R1895 T4766 T4752 arg1Of we,elucidate
R1897 T4766 T4767 arg1Of we,investigated
R1898 T4767 T4751 modOf investigated,To
R1900 T4767 T4765 arg1Of investigated,","
R1901 T4769 T4768 arg1Of production,the
R1903 T4769 T4770 arg1Of production,of
R1905 T4769 T4793 arg1Of production,and
R1906 T4771 T4770 arg2Of IFN-γ,of
R1909 T4771 T4772 arg1Of IFN-γ,after
R1910 T4771 T4777 arg1Of IFN-γ,in
R1912 T4773 T4774 arg1Of CD3,and
R1913 T4775 T4774 arg2Of CD28,and
R1915 T4776 T4772 arg2Of costimulation,after
R1916 T4776 T4773 arg1Of costimulation,CD3
R1918 T4776 T4775 arg1Of costimulation,CD28
R1919 T4779 T4777 arg2Of presence,in
R1921 T4779 T4778 arg1Of presence,the
R1922 T4779 T4780 arg1Of presence,of
R1924 T4781 T4780 arg2Of IL-10,of
R1925 T4781 T4782 arg1Of IL-10,","
R1926 T4784 T4782 arg2Of induction,","
R1927 T4784 T4783 arg1Of induction,the
R1928 T4784 T4785 arg1Of induction,of
R1929 T4784 T4790 arg1Of induction,by
R1930 T4786 T4787 arg1Of STAT1,and
R1931 T4788 T4787 arg2Of STAT3,and
R1933 T4789 T4785 arg2Of phosphorylation,of
R1935 T4789 T4786 arg1Of phosphorylation,STAT1
R1936 T4789 T4788 arg1Of phosphorylation,STAT3
R1938 T4791 T4790 arg2Of IL-10,by
R1939 T4793 T4767 arg2Of and,investigated
R1941 T4793 T4792 arg1Of and,","
R1942 T4795 T4793 arg2Of expression,and
R1944 T4795 T4794 arg1Of expression,the
R1946 T4795 T4796 arg1Of expression,of
R1947 T4795 T4801 arg1Of expression,in
R1949 T4795 T4810 arg1Of expression,from
R1950 T4797 T4798 arg1Of SOCS1,and
R1953 T4799 T4798 arg2Of SOCS3,and
R1956 T4800 T4796 arg2Of mRNA,of
R1958 T4800 T4797 arg1Of mRNA,SOCS1
R1959 T4800 T4799 arg1Of mRNA,SOCS3
R1961 T4805 T4804 arg2Of PB,(
R1963 T4806 T4804 arg3Of ),(
R1964 T4809 T4801 arg2Of cells,in
R1965 T4809 T4802 arg1Of cells,peripheral
R1966 T4809 T4803 arg1Of cells,blood
R1967 T4809 T4804 arg1Of cells,(
R1969 T4809 T4807 arg1Of cells,CD4+
R1970 T4809 T4808 arg1Of cells,T
R1972 T4812 T4810 arg2Of patients,from
R1975 T4812 T4811 arg1Of patients,RA

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T3536 503-506 Protein denotes CD4
T3535 467-472 Protein denotes SOCS3
T3534 457-462 Protein denotes SOCS1
T3533 428-433 Protein denotes IL-10
T3532 403-408 Protein denotes STAT3
T3531 393-398 Protein denotes STAT1
T3530 369-374 Protein denotes IL-10
T3529 331-335 Protein denotes CD28
T3528 311-316 Protein denotes IFN-γ
T3527 231-234 Protein denotes CD4
T3526 89-93 Protein denotes CD28
T3525 0-5 Protein denotes IL-10

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3698 403-408 http://www.uniprot.org/uniprot/P40763 denotes STAT3
T3689 428-433 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T3688 369-374 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T3687 0-5 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T3864 457-462 http://www.uniprot.org/uniprot/O15524 denotes SOCS1
T3863 323-326 http://www.uniprot.org/uniprot/P09693 denotes CD3
T3862 323-326 http://www.uniprot.org/uniprot/P07766 denotes CD3
T3861 323-326 http://www.uniprot.org/uniprot/P04234 denotes CD3
T3860 323-326 http://www.uniprot.org/uniprot/P20963 denotes CD3
T3858 311-316 http://www.uniprot.org/uniprot/P01579 denotes IFN-γ
T3852 331-335 http://www.uniprot.org/uniprot/P10747 denotes CD28
T3851 89-93 http://www.uniprot.org/uniprot/P10747 denotes CD28
T3847 503-506 http://www.uniprot.org/uniprot/P01730 denotes CD4
T3846 231-234 http://www.uniprot.org/uniprot/P01730 denotes CD4

UBERON-AE

Id Subject Object Predicate Lexical cue
T2429 492-497 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T3310 53-70 http://purl.obolibrary.org/obo/GO_0034097 denotes cytokine response
T3309 46-61 http://purl.obolibrary.org/obo/GO_0002369 denotes T-cell cytokine
T3284 94-103 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling
T3274 409-424 http://purl.obolibrary.org/obo/GO_0016310 denotes phosphorylation

GO-CC

Id Subject Object Predicate Lexical cue
T3592 510-515 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3591 238-243 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3590 193-198 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3589 48-52 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

GO-MF

Id Subject Object Predicate Lexical cue
T3551 428-433 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10
T3550 369-374 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10
T3549 0-5 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

sentences

Id Subject Object Predicate Lexical cue
T3258 200-533 Sentence denotes To elucidate the resistance of CD4+ T cells to this direct inhibition in RA, we investigated the production of IFN-γ after CD3 and CD28 costimulation in the presence of IL-10, the induction of STAT1 and STAT3 phosphorylation by IL-10, and the expression of SOCS1 and SOCS3 mRNA in peripheral blood (PB) CD4+ T cells from RA patients.
T3257 0-199 Sentence denotes IL-10 efficiently blocks the antigen-specific T-cell cytokine response by inhibiting the CD28 signaling pathway [24], as well as indirectly by downregulating the function of antigen-presenting cells.
T34 0-199 Sentence denotes IL-10 efficiently blocks the antigen-specific T-cell cytokine response by inhibiting the CD28 signaling pathway [24], as well as indirectly by downregulating the function of antigen-presenting cells.
T35 200-533 Sentence denotes To elucidate the resistance of CD4+ T cells to this direct inhibition in RA, we investigated the production of IFN-γ after CD3 and CD28 costimulation in the presence of IL-10, the induction of STAT1 and STAT3 phosphorylation by IL-10, and the expression of SOCS1 and SOCS3 mRNA in peripheral blood (PB) CD4+ T cells from RA patients.

simple1

Id Subject Object Predicate Lexical cue
T3939 503-506 Protein denotes CD4
T3938 467-472 Protein denotes SOCS3
T3937 457-462 Protein denotes SOCS1
T3936 428-433 Protein denotes IL-10
T3935 403-408 Protein denotes STAT3
T3934 393-398 Protein denotes STAT1
T3933 369-374 Protein denotes IL-10
T3932 331-335 Protein denotes CD28
T3931 311-316 Protein denotes IFN-γ
T3930 231-234 Protein denotes CD4
T3929 89-93 Protein denotes CD28
T3928 0-5 Protein denotes IL-10

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6472 443-453 Gene_expression denotes expression
T6449 503-506 Protein denotes CD4
T6448 467-472 Protein denotes SOCS3
T6447 457-462 Protein denotes SOCS1
T6446 428-433 Protein denotes IL-10
T6445 403-408 Protein denotes STAT3
T6444 393-398 Protein denotes STAT1
T6443 369-374 Protein denotes IL-10
T6442 331-335 Protein denotes CD28
T6441 311-316 Protein denotes IFN-γ
T6440 231-234 Protein denotes CD4
T6439 89-93 Protein denotes CD28
T6438 0-5 Protein denotes IL-10
T6475 297-307 Gene_expression denotes production
T6474 409-424 Phosphorylation denotes phosphorylation
T6473 380-389 Positive_regulation denotes induction
R3174 T6441 T6475 themeOf IFN-γ,production
R3175 T6444 T6473 themeOf STAT1,induction
R3176 T6444 T6474 themeOf STAT1,phosphorylation
R3177 T6445 T6473 themeOf STAT3,induction
R3178 T6445 T6474 themeOf STAT3,phosphorylation
R3179 T6446 T6473 causeOf IL-10,induction
R3180 T6446 T6473 causeOf IL-10,induction
R3181 T6446 T6473 causeOf IL-10,induction
R3182 T6446 T6473 causeOf IL-10,induction
R3183 T6447 T6472 themeOf SOCS1,expression
R3184 T6448 T6472 themeOf SOCS3,expression
R3190 T6474 T6473 themeOf phosphorylation,induction
R3191 T6474 T6473 themeOf phosphorylation,induction

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T4914 297-307 Gene_expression denotes production
T4913 443-453 Gene_expression denotes expression
T4912 380-389 Positive_regulation denotes induction
T4911 409-424 Phosphorylation denotes phosphorylation
T4887 503-506 Protein denotes CD4
T4886 467-472 Protein denotes SOCS3
T4885 457-462 Protein denotes SOCS1
T4884 428-433 Protein denotes IL-10
T4883 403-408 Protein denotes STAT3
T4882 393-398 Protein denotes STAT1
T4881 369-374 Protein denotes IL-10
T4880 331-335 Protein denotes CD28
T4879 311-316 Protein denotes IFN-γ
T4878 231-234 Protein denotes CD4
T4877 89-93 Protein denotes CD28
T4876 0-5 Protein denotes IL-10
R1940 T4879 T4914 themeOf IFN-γ,production
R1943 T4882 T4912 themeOf STAT1,induction
R1945 T4882 T4911 themeOf STAT1,phosphorylation
R1948 T4883 T4912 themeOf STAT3,induction
R1951 T4883 T4911 themeOf STAT3,phosphorylation
R1952 T4884 T4912 causeOf IL-10,induction
R1954 T4884 T4912 causeOf IL-10,induction
R1955 T4884 T4912 causeOf IL-10,induction
R1957 T4884 T4912 causeOf IL-10,induction
R1960 T4885 T4913 themeOf SOCS1,expression
R1962 T4886 T4913 themeOf SOCS3,expression
R1980 T4911 T4912 themeOf phosphorylation,induction
R1981 T4911 T4912 themeOf phosphorylation,induction

DLUT931

Id Subject Object Predicate Lexical cue
T5934 280-292 Positive_regulation denotes investigated
T5933 443-453 Gene_expression denotes expression
T5932 409-424 Phosphorylation denotes phosphorylation
T5931 380-389 Positive_regulation denotes induction
T5930 336-349 Positive_regulation denotes costimulation
T5929 297-307 Gene_expression denotes production
T5928 74-84 Negative_regulation denotes inhibiting
T5899 503-506 Protein denotes CD4
T5898 467-472 Protein denotes SOCS3
T5897 457-462 Protein denotes SOCS1
T5896 428-433 Protein denotes IL-10
T5895 403-408 Protein denotes STAT3
T5894 393-398 Protein denotes STAT1
T5893 369-374 Protein denotes IL-10
T5892 331-335 Protein denotes CD28
T5891 311-316 Protein denotes IFN-γ
T5890 231-234 Protein denotes CD4
T5889 89-93 Protein denotes CD28
T5888 0-5 Protein denotes IL-10
R2935 T5894 T5931 themeOf STAT1,induction
R2936 T5894 T5932 themeOf STAT1,phosphorylation
R2937 T5895 T5931 themeOf STAT3,induction
R2938 T5895 T5932 themeOf STAT3,phosphorylation
R2939 T5896 T5931 causeOf IL-10,induction
R2940 T5896 T5931 causeOf IL-10,induction
R2941 T5896 T5931 causeOf IL-10,induction
R2942 T5896 T5931 causeOf IL-10,induction
R2943 T5896 T5931 causeOf IL-10,induction
R2944 T5897 T5933 themeOf SOCS1,expression
R2945 T5898 T5933 themeOf SOCS3,expression
R2967 T5888 T5928 causeOf IL-10,inhibiting
R2968 T5889 T5928 themeOf CD28,inhibiting
R2969 T5891 T5929 themeOf IFN-γ,production
R2976 T5892 T5930 themeOf CD28,costimulation
R2977 T5929 T5934 themeOf production,investigated
R2978 T5929 T5930 themeOf production,costimulation
R2979 T5929 T5931 themeOf production,induction
R2980 T5931 T5934 themeOf induction,investigated
R2981 T5931 T5934 themeOf induction,investigated
R2982 T5931 T5934 themeOf induction,investigated
R2984 T5932 T5931 themeOf phosphorylation,induction
R2985 T5932 T5931 themeOf phosphorylation,induction
R2986 T5933 T5934 themeOf expression,investigated
R2987 T5933 T5934 themeOf expression,investigated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6348 331-349 Positive_regulation denotes CD28 costimulation
T6284 403-408 Protein denotes STAT3
T6181 516-523 Protein denotes from RA
T6240 228-243 Entity denotes of CD4+ T cells
T6226 308-316 Protein denotes of IFN-γ
T6223 467-472 Protein denotes SOCS3
T6207 171-181 Entity denotes of antigen
T6203 89-93 Protein denotes CD28
T6201 193-198 Entity denotes cells
T6280 425-433 Protein denotes by IL-10
T6270 323-326 Protein denotes CD3
T6266 508-515 Entity denotes T cells
T6261 457-462 Protein denotes SOCS1
T6258 0-5 Protein denotes IL-10
T6255 29-45 Entity denotes antigen-specific
T6253 369-374 Protein denotes IL-10
T6299 331-335 Protein denotes CD28
T6334 25-70 Protein denotes the antigen-specific T-cell cytokine response
T6329 46-52 Entity denotes T-cell
T6328 503-506 Protein denotes CD4
T6324 499-501 Protein denotes PB
T6309 393-398 Protein denotes STAT1
T6305 273-275 Protein denotes RA
T6367 439-472 Gene_expression denotes the expression of SOCS1 and SOCS3
T6366 439-472 Gene_expression denotes the expression of SOCS1 and SOCS3
T6364 376-408 Gene_expression denotes the induction of STAT1 and STAT3
T6363 376-408 Positive_regulation denotes the induction of STAT1 and STAT3
T6362 376-408 Positive_regulation denotes the induction of STAT1 and STAT3
T6361 376-408 Gene_expression denotes the induction of STAT1 and STAT3
T6357 280-316 Gene_expression denotes investigated the production of IFN-γ
R3112 T6223 T6366 themeOf SOCS3,the expression of SOCS1 and SOCS3
R3113 T6226 T6357 themeOf of IFN-γ,investigated the production of IFN-γ
R3116 T6261 T6367 themeOf SOCS1,the expression of SOCS1 and SOCS3
R3124 T6284 T6363 themeOf STAT3,the induction of STAT1 and STAT3
R3125 T6284 T6364 themeOf STAT3,the induction of STAT1 and STAT3
R3129 T6299 T6348 themeOf CD28,CD28 costimulation
R3131 T6309 T6361 themeOf STAT1,the induction of STAT1 and STAT3
R3133 T6309 T6362 themeOf STAT1,the induction of STAT1 and STAT3

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5824 532-533 . denotes .
T5823 524-532 NNS denotes patients
T5822 521-523 NNP denotes RA
T5821 516-520 IN denotes from
T5820 510-515 NNS denotes cells
T5819 508-509 NNP denotes T
T5818 506-507 CD denotes +
T5817 503-506 NNP denotes CD4
T5816 501-502 -RRB- denotes )
T5815 499-501 NNP denotes PB
T5814 498-499 -LRB- denotes (
T5813 492-497 NN denotes blood
T5812 481-491 JJ denotes peripheral
T5811 478-480 IN denotes in
T5810 473-477 NNP denotes mRNA
T5809 467-472 CD denotes SOCS3
T5808 463-466 CC denotes and
T5807 457-462 CD denotes SOCS1
T5806 454-456 IN denotes of
T5805 443-453 NN denotes expression
T5804 439-442 DT denotes the
T5803 435-438 CC denotes and
T5802 433-434 , denotes ,
T5801 428-433 NNP denotes IL-10
T5800 425-427 IN denotes by
T5799 409-424 NN denotes phosphorylation
T5798 403-408 CD denotes STAT3
T5797 399-402 CC denotes and
T5796 393-398 CD denotes STAT1
T5795 390-392 IN denotes of
T5794 380-389 NN denotes induction
T5793 376-379 DT denotes the
T5792 374-375 , denotes ,
T5791 369-374 NNP denotes IL-10
T5790 366-368 IN denotes of
T5789 357-365 NN denotes presence
T5788 353-356 DT denotes the
T5787 350-352 IN denotes in
T5786 336-349 NN denotes costimulation
T5785 331-335 NNP denotes CD28
T5784 327-330 CC denotes and
T5783 323-326 NNP denotes CD3
T5782 317-322 IN denotes after
T5781 311-316 NNP denotes IFN-γ
T5780 308-310 IN denotes of
T5779 297-307 NN denotes production
T5778 293-296 DT denotes the
T5777 280-292 VBD denotes investigated
T5776 277-279 PRP denotes we
T5775 275-276 , denotes ,
T5774 273-275 NNP denotes RA
T5773 270-272 IN denotes in
T5772 259-269 NN denotes inhibition
T5771 252-258 JJ denotes direct
T5770 247-251 DT denotes this
T5769 244-246 TO denotes to
T5768 238-243 NNS denotes cells
T5767 236-237 NNP denotes T
T5766 234-235 CD denotes +
T5765 231-234 CD denotes CD4
T5764 228-230 IN denotes of
T5763 217-227 NN denotes resistance
T5762 213-216 DT denotes the
T5761 203-212 VB denotes elucidate
T5760 200-202 TO denotes To
T5759 198-199 . denotes .
T5758 193-198 NNS denotes cells
T5757 174-192 JJ denotes antigen-presenting
T5756 171-173 IN denotes of
T5755 162-170 NN denotes function
T5754 158-161 DT denotes the
T5753 143-157 VBG denotes downregulating
T5752 140-142 IN denotes by
T5751 129-139 RB denotes indirectly
T5750 126-128 IN denotes as
T5749 121-125 RB denotes well
T5748 118-120 RB denotes as
T5747 116-117 , denotes ,
T5746 115-116 NNP denotes ]
T5745 113-115 CD denotes 24
T5744 112-113 NNP denotes [
T5743 104-111 NN denotes pathway
T5742 94-103 VBG denotes signaling
T5741 89-93 NNP denotes CD28
T5740 85-88 DT denotes the
T5739 74-84 VBG denotes inhibiting
T5738 71-73 IN denotes by
T5737 62-70 NN denotes response
T5736 53-61 NN denotes cytokine
T5735 46-52 NN denotes T-cell
T5734 29-45 JJ denotes antigen-specific
T5733 25-28 DT denotes the
T5732 18-24 VBZ denotes blocks
T5731 6-17 RB denotes efficiently
T5730 0-5 NN denotes IL-10
R2781 T5730 T5732 nsubj IL-10,blocks
R2782 T5731 T5732 advmod efficiently,blocks
R2783 T5732 T5732 ROOT blocks,blocks
R2785 T5733 T5737 det the,response
R2786 T5734 T5737 amod antigen-specific,response
R2787 T5735 T5737 compound T-cell,response
R2789 T5736 T5737 compound cytokine,response
R2790 T5737 T5732 dobj response,blocks
R2792 T5738 T5732 prep by,blocks
R2793 T5739 T5738 pcomp inhibiting,by
R2795 T5740 T5741 det the,CD28
R2796 T5741 T5739 dobj CD28,inhibiting
R2797 T5742 T5739 conj signaling,inhibiting
R2799 T5743 T5746 compound pathway,]
R2800 T5744 T5746 nmod [,]
R2801 T5745 T5746 nummod 24,]
R2803 T5746 T5742 dobj ],signaling
R2804 T5747 T5746 punct ",",]
R2805 T5748 T5750 advmod as,as
R2807 T5749 T5750 advmod well,as
R2808 T5750 T5746 cc as,]
R2809 T5751 T5742 advmod indirectly,signaling
R2811 T5752 T5742 prep by,signaling
R2812 T5753 T5752 pcomp downregulating,by
R2813 T5754 T5755 det the,function
R2815 T5755 T5753 dobj function,downregulating
R2816 T5756 T5755 prep of,function
R2817 T5757 T5758 amod antigen-presenting,cells
R2819 T5758 T5756 pobj cells,of
R2820 T5759 T5732 punct .,blocks
R2821 T5760 T5761 aux To,elucidate
R2823 T5761 T5777 advcl elucidate,investigated
R2825 T5762 T5763 det the,resistance
R2827 T5763 T5761 dobj resistance,elucidate
R2828 T5764 T5763 prep of,resistance
R2829 T5806 T5805 prep of,expression
R2830 T5765 T5768 nummod CD4,cells
R2831 T5766 T5768 nummod +,cells
R2832 T5767 T5768 compound T,cells
R2833 T5768 T5764 pobj cells,of
R2834 T5769 T5761 prep to,elucidate
R2835 T5807 T5806 pobj SOCS1,of
R2836 T5770 T5772 det this,inhibition
R2837 T5771 T5772 amod direct,inhibition
R2838 T5772 T5769 pobj inhibition,to
R2839 T5773 T5772 prep in,inhibition
R2840 T5808 T5807 cc and,SOCS1
R2841 T5774 T5773 pobj RA,in
R2842 T5775 T5777 punct ",",investigated
R2843 T5776 T5777 nsubj we,investigated
R2844 T5777 T5777 ROOT investigated,investigated
R2845 T5778 T5779 det the,production
R2846 T5779 T5777 dobj production,investigated
R2847 T5809 T5807 conj SOCS3,SOCS1
R2848 T5780 T5779 prep of,production
R2849 T5781 T5780 pobj IFN-γ,of
R2850 T5782 T5777 prep after,investigated
R2851 T5810 T5805 appos mRNA,expression
R2852 T5783 T5786 nsubj CD3,costimulation
R2853 T5784 T5783 cc and,CD3
R2854 T5785 T5783 conj CD28,CD3
R2855 T5786 T5782 pobj costimulation,after
R2856 T5811 T5799 prep in,phosphorylation
R2857 T5787 T5786 prep in,costimulation
R2858 T5788 T5789 det the,presence
R2859 T5812 T5813 amod peripheral,blood
R2860 T5789 T5787 pobj presence,in
R2861 T5790 T5789 prep of,presence
R2862 T5791 T5790 pobj IL-10,of
R2863 T5792 T5791 punct ",",IL-10
R2864 T5813 T5811 pobj blood,in
R2865 T5793 T5794 det the,induction
R2866 T5794 T5791 appos induction,IL-10
R2867 T5814 T5815 punct (,PB
R2868 T5795 T5794 prep of,induction
R2869 T5796 T5795 pobj STAT1,of
R2870 T5797 T5796 cc and,STAT1
R2871 T5815 T5791 appos PB,IL-10
R2872 T5798 T5799 nummod STAT3,phosphorylation
R2873 T5799 T5796 conj phosphorylation,STAT1
R2874 T5800 T5799 prep by,phosphorylation
R2875 T5816 T5815 punct ),PB
R2876 T5801 T5800 pobj IL-10,by
R2877 T5802 T5799 punct ",",phosphorylation
R2878 T5803 T5799 cc and,phosphorylation
R2879 T5817 T5820 nsubj CD4,cells
R2880 T5804 T5805 det the,expression
R2881 T5805 T5799 conj expression,phosphorylation
R2882 T5818 T5820 nummod +,cells
R2883 T5819 T5820 compound T,cells
R2884 T5820 T5820 ROOT cells,cells
R2885 T5821 T5820 prep from,cells
R2887 T5822 T5823 compound RA,patients
R2889 T5823 T5821 pobj patients,from
R2894 T5824 T5820 punct .,cells

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T3834 317-322 Positive_regulation denotes after
T3833 317-322 Positive_regulation denotes after
T3832 280-292 Positive_regulation denotes investigated
T3831 280-292 Positive_regulation denotes investigated
T3830 280-292 Positive_regulation denotes investigated
T3829 280-292 Positive_regulation denotes investigated
T3828 443-453 Gene_expression denotes expression
T3827 443-453 Gene_expression denotes expression
T3826 409-424 Phosphorylation denotes phosphorylation
T3825 409-424 Phosphorylation denotes phosphorylation
T3824 380-389 Positive_regulation denotes induction
T3823 380-389 Positive_regulation denotes induction
T3822 336-349 Positive_regulation denotes costimulation
T3821 336-349 Positive_regulation denotes costimulation
T3820 297-307 Gene_expression denotes production
T3819 467-477 Protein denotes SOCS3 mRNA
T3818 457-462 Protein denotes SOCS1
T3817 428-433 Protein denotes IL-10
T3816 403-408 Protein denotes STAT3
T3815 393-398 Protein denotes STAT1
T3814 369-374 Protein denotes IL-10
T3813 331-335 Protein denotes CD28
T3812 323-326 Protein denotes CD3
T3811 311-316 Protein denotes IFN-γ
T3810 231-235 Protein denotes CD4+
T3809 89-93 Protein denotes CD28
T3808 0-5 Protein denotes IL-10
T3838 380-389 Positive_regulation denotes induction
T3837 380-389 Positive_regulation denotes induction
T3836 317-322 Positive_regulation denotes after
T3835 317-322 Positive_regulation denotes after
R1006 T3811 T3820 themeOf IFN-γ,production
R1007 T3813 T3821 themeOf CD28,costimulation
R1008 T3815 T3823 themeOf STAT1,induction
R1009 T3815 T3825 themeOf STAT1,phosphorylation
R1010 T3816 T3824 themeOf STAT3,induction
R1011 T3816 T3826 themeOf STAT3,phosphorylation
R1012 T3817 T3823 causeOf IL-10,induction
R1013 T3817 T3824 causeOf IL-10,induction
R1014 T3817 T3837 causeOf IL-10,induction
R1015 T3817 T3838 causeOf IL-10,induction
R1016 T3818 T3827 themeOf SOCS1,expression
R1017 T3819 T3828 themeOf SOCS3 mRNA,expression
R1018 T3820 T3822 themeOf production,costimulation
R1019 T3821 T3833 themeOf costimulation,after
R1020 T3822 T3834 themeOf costimulation,after
R1021 T3823 T3829 themeOf induction,investigated
R1022 T3824 T3830 themeOf induction,investigated
R1023 T3825 T3835 themeOf phosphorylation,after
R1024 T3825 T3837 themeOf phosphorylation,induction
R1025 T3826 T3836 themeOf phosphorylation,after
R1026 T3826 T3838 themeOf phosphorylation,induction
R1027 T3827 T3831 themeOf expression,investigated
R1028 T3828 T3832 themeOf expression,investigated

test3

Id Subject Object Predicate Lexical cue
T2413 231-234 Protein denotes CD4
T2412 89-93 Protein denotes CD28
T2411 0-5 Protein denotes IL-10
T2321 89-93 Protein denotes CD28
T2320 0-5 Protein denotes IL-10
T2255 503-506 Protein denotes CD4
T2254 467-472 Protein denotes SOCS3
T2253 457-462 Protein denotes SOCS1
T2252 428-433 Protein denotes IL-10
T2251 403-408 Protein denotes STAT3
T2250 393-398 Protein denotes STAT1
T2249 369-374 Protein denotes IL-10
T2248 331-335 Protein denotes CD28
T2247 311-316 Protein denotes IFN-γ
T2246 231-234 Protein denotes CD4
T2426 503-506 Protein denotes CD4
T2425 467-472 Protein denotes SOCS3
T2424 457-462 Protein denotes SOCS1
T2423 443-453 Gene_expression denotes expression
T2422 428-433 Protein denotes IL-10
T2421 409-424 Phosphorylation denotes phosphorylation
T2420 403-408 Protein denotes STAT3
T2419 393-398 Protein denotes STAT1
T2418 380-389 Positive_regulation denotes induction
T2417 369-374 Protein denotes IL-10
T2416 331-335 Protein denotes CD28
T2415 311-316 Protein denotes IFN-γ
T2414 297-307 Gene_expression denotes production
R821 T2415 T2414 themeOf IFN-γ,production
R822 T2416 T2414 themeOf CD28,production
R823 T2419 T2421 themeOf STAT1,phosphorylation
R824 T2420 T2421 themeOf STAT3,phosphorylation
R825 T2421 T2418 themeOf phosphorylation,induction
R826 T2422 T2418 causeOf IL-10,induction
R827 T2424 T2423 themeOf SOCS1,expression
R828 T2425 T2423 themeOf SOCS3,expression

testone

Id Subject Object Predicate Lexical cue
T2174 443-453 Gene_expression denotes expression
T2173 409-424 Phosphorylation denotes phosphorylation
T2172 380-389 Positive_regulation denotes induction
T2171 297-307 Gene_expression denotes production
T2145 503-506 Protein denotes CD4
T2144 467-472 Protein denotes SOCS3
T2143 457-462 Protein denotes SOCS1
T2142 428-433 Protein denotes IL-10
T2141 403-408 Protein denotes STAT3
T2140 393-398 Protein denotes STAT1
T2139 369-374 Protein denotes IL-10
T2138 331-335 Protein denotes CD28
T2137 311-316 Protein denotes IFN-γ
T2136 231-234 Protein denotes CD4
T2135 89-93 Protein denotes CD28
T2134 0-5 Protein denotes IL-10
R752 T2137 T2171 themeOf IFN-γ,production
R753 T2138 T2171 themeOf CD28,production
R754 T2140 T2173 themeOf STAT1,phosphorylation
R755 T2141 T2173 themeOf STAT3,phosphorylation
R756 T2142 T2172 causeOf IL-10,induction
R757 T2143 T2174 themeOf SOCS1,expression
R758 T2144 T2174 themeOf SOCS3,expression
R767 T2173 T2172 themeOf phosphorylation,induction