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PMC:1064873 / 28065-28262 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T22126 164-171 Protein denotes ST CD4+
T22125 62-67 Protein denotes STAT3
T22124 44-49 Protein denotes STAT3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T25261 188-196 NN denotes patients
T25260 185-187 NN denotes RA
T25259 180-184 IN denotes from
T25258 174-179 NN denotes cells
T25257 172-173 NN denotes T
T25256 167-171 JJ denotes CD4+
T25255 164-166 JJ denotes ST
T25254 160-163 CC denotes and
T25253 157-159 NN denotes PB
T25252 148-156 VB denotes isolated
T25251 140-147 RB denotes freshly
T25250 137-139 IN denotes in
T25249 135-136 -RRB- denotes )
T25248 130-135 NN denotes hours
T25247 128-129 CD denotes 6
T25246 125-127 TO denotes to
T25245 122-124 RB denotes up
T25244 121-122 -LRB- denotes (
T25243 108-120 RB denotes persistently
T25242 93-107 VB denotes phosphorylated
T25241 84-92 NN denotes tyrosine
T25240 81-83 VB denotes be
T25239 78-80 TO denotes to
T25238 72-77 VB denotes found
T25237 68-71 VB denotes was
T25236 62-67 NN denotes STAT3
T25235 60-61 -COMMA- denotes ,
T25234 50-60 NN denotes activation
T25233 44-49 NN denotes STAT3
T25232 29-43 JJ denotes IL-10-mediated
T25231 20-28 JJ denotes impaired
T25230 15-19 IN denotes with
T25229 3-14 NN denotes association
T25228 0-2 IN denotes In
R12295 T25229 T25228 arg2Of association,In
R12296 T25229 T25230 arg1Of association,with
R12297 T25232 T25231 arg1Of IL-10-mediated,impaired
R12298 T25234 T25230 arg2Of activation,with
R12299 T25234 T25232 arg1Of activation,IL-10-mediated
R12300 T25234 T25233 arg1Of activation,STAT3
R12301 T25236 T25237 arg1Of STAT3,was
R12302 T25236 T25238 arg2Of STAT3,found
R12303 T25236 T25240 arg1Of STAT3,be
R12304 T25238 T25228 arg1Of found,In
R12305 T25238 T25235 arg1Of found,","
R12306 T25238 T25237 arg2Of found,was
R12307 T25240 T25238 arg3Of be,found
R12308 T25240 T25239 arg1Of be,to
R12309 T25241 T25240 arg2Of tyrosine,be
R12310 T25241 T25242 arg2Of tyrosine,phosphorylated
R12311 T25241 T25250 arg1Of tyrosine,in
R12312 T25242 T25243 arg1Of phosphorylated,persistently
R12313 T25243 T25244 arg1Of persistently,(
R12314 T25247 T25245 arg1Of 6,up
R12315 T25247 T25246 arg1Of 6,to
R12316 T25248 T25244 arg2Of hours,(
R12317 T25248 T25247 arg1Of hours,6
R12318 T25249 T25244 arg3Of ),(
R12319 T25252 T25251 arg1Of isolated,freshly
R12320 T25253 T25254 arg1Of PB,and
R12321 T25255 T25254 arg2Of ST,and
R12322 T25258 T25250 arg2Of cells,in
R12323 T25258 T25252 arg1Of cells,isolated
R12324 T25258 T25253 arg1Of cells,PB
R12325 T25258 T25255 arg1Of cells,ST
R12326 T25258 T25256 arg1Of cells,CD4+
R12327 T25258 T25257 arg1Of cells,T
R12328 T25258 T25259 arg1Of cells,from
R12329 T25261 T25259 arg2Of patients,from
R12330 T25261 T25260 arg1Of patients,RA

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T23420 167-170 Protein denotes CD4
T23419 62-67 Protein denotes STAT3
T23418 44-49 Protein denotes STAT3
T23417 29-34 Protein denotes IL-10

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T26400 62-67 http://www.uniprot.org/uniprot/P40763 denotes STAT3
T26399 44-49 http://www.uniprot.org/uniprot/P40763 denotes STAT3
T26354 29-34 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T24246 167-170 http://www.uniprot.org/uniprot/P01730 denotes CD4

GO-CC

Id Subject Object Predicate Lexical cue
T23668 174-179 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T23574 29-34 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

sentences

Id Subject Object Predicate Lexical cue
T22822 0-197 Sentence denotes In association with impaired IL-10-mediated STAT3 activation, STAT3 was found to be tyrosine phosphorylated persistently (up to 6 hours) in freshly isolated PB and ST CD4+ T cells from RA patients.
T165 0-197 Sentence denotes In association with impaired IL-10-mediated STAT3 activation, STAT3 was found to be tyrosine phosphorylated persistently (up to 6 hours) in freshly isolated PB and ST CD4+ T cells from RA patients.

simple1

Id Subject Object Predicate Lexical cue
T24362 167-170 Protein denotes CD4
T24361 62-67 Protein denotes STAT3
T24360 44-49 Protein denotes STAT3
T24359 29-34 Protein denotes IL-10

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T30196 167-170 Protein denotes CD4
T30195 62-67 Protein denotes STAT3
T30194 44-49 Protein denotes STAT3
T30193 29-34 Protein denotes IL-10
T30363 50-60 Positive_regulation denotes activation
T30362 93-107 Phosphorylation denotes phosphorylated
R16127 T30194 T30363 themeOf STAT3,activation
R16129 T30195 T30362 themeOf STAT3,phosphorylated

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T26730 35-43 Positive_regulation denotes mediated
T26729 50-60 Positive_regulation denotes activation
T26728 20-28 Negative_regulation denotes impaired
T26552 167-170 Protein denotes CD4
T26551 62-67 Protein denotes STAT3
T26550 44-49 Protein denotes STAT3
T26549 29-34 Protein denotes IL-10
R13469 T26550 T26729 themeOf STAT3,activation
R13593 T26729 T26728 themeOf activation,impaired
R13596 T26729 T26730 themeOf activation,mediated

DLUT931

Id Subject Object Predicate Lexical cue
T28819 35-43 Positive_regulation denotes mediated
T28818 20-28 Negative_regulation denotes impaired
T28817 93-107 Phosphorylation denotes phosphorylated
T28816 50-60 Positive_regulation denotes activation
T28815 3-14 Binding denotes association
T28636 167-170 Protein denotes CD4
T28635 62-67 Protein denotes STAT3
T28634 44-49 Protein denotes STAT3
T28633 29-34 Protein denotes IL-10
R15416 T28633 T28819 causeOf IL-10,mediated
R15417 T28634 T28816 themeOf STAT3,activation
R15419 T28635 T28815 themeOf STAT3,association
R15420 T28635 T28817 themeOf STAT3,phosphorylated
R15483 T28816 T28818 themeOf activation,impaired
R15484 T28816 T28819 themeOf activation,mediated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T30076 15-60 Regulation denotes with impaired IL-10-mediated STAT3 activation
T30063 20-43 Negative_regulation denotes impaired IL-10-mediated
T30030 15-60 Positive_regulation denotes with impaired IL-10-mediated STAT3 activation
T30004 44-49 Protein denotes STAT3
T29960 20-43 Protein denotes impaired IL-10-mediated
T29938 185-187 Protein denotes RA
T29730 62-67 Protein denotes STAT3
T29768 157-179 Entity denotes PB and ST CD4+ T cells
T29766 84-92 Entity denotes tyrosine
T29764 157-159 Protein denotes PB
T29820 164-171 Protein denotes ST CD4+
R16017 T30004 T30030 themeOf STAT3,with impaired IL-10-mediated STAT3 activation
R16032 T30030 T30076 themeOf with impaired IL-10-mediated STAT3 activation,with impaired IL-10-mediated STAT3 activation
R16057 T29960 T30063 themeOf impaired IL-10-mediated,impaired IL-10-mediated
R16059 T29960 T30076 causeOf impaired IL-10-mediated,with impaired IL-10-mediated STAT3 activation

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T27615 196-197 . denotes .
T27614 188-196 NNS denotes patients
T27613 185-187 NNP denotes RA
T27612 180-184 IN denotes from
T27611 174-179 NNS denotes cells
T27610 172-173 NNP denotes T
T27609 170-171 VBD denotes +
T27608 167-170 NNP denotes CD4
T27607 164-166 NNP denotes ST
T27606 160-163 CC denotes and
T27605 157-159 NNP denotes PB
T27604 148-156 VBN denotes isolated
T27603 140-147 RB denotes freshly
T27601 135-136 -RRB- denotes )
T27600 130-135 NNS denotes hours
T27599 128-129 CD denotes 6
T27598 125-127 TO denotes to
T27597 122-124 IN denotes up
T27596 121-122 -LRB- denotes (
T27595 108-120 RB denotes persistently
T27594 93-107 VBN denotes phosphorylated
T27593 84-92 JJ denotes tyrosine
T27592 81-83 VB denotes be
T27591 78-80 TO denotes to
T27590 72-77 VBN denotes found
T27589 68-71 VBD denotes was
T27588 62-67 NNP denotes STAT3
T27587 60-61 , denotes ,
T27586 50-60 NN denotes activation
T27585 44-49 CD denotes STAT3
T27584 29-43 JJ denotes IL-10-mediated
T27583 20-28 JJ denotes impaired
T27582 15-19 IN denotes with
T27581 3-14 NN denotes association
T27580 0-2 IN denotes In
T27602 137-139 IN denotes in
R14351 T27580 T27590 prep In,found
R14356 T27581 T27580 pobj association,In
R14359 T27582 T27581 prep with,association
R14364 T27583 T27586 amod impaired,activation
R14367 T27584 T27586 amod IL-10-mediated,activation
R14372 T27585 T27586 nummod STAT3,activation
R14378 T27586 T27582 pobj activation,with
R14382 T27587 T27590 punct ",",found
R14386 T27588 T27590 nsubjpass STAT3,found
R14390 T27589 T27590 auxpass was,found
R14393 T27590 T27590 ROOT found,found
R14395 T27591 T27592 aux to,be
R14396 T27592 T27590 xcomp be,found
R14397 T27601 T27594 punct ),phosphorylated
R14398 T27602 T27594 prep in,phosphorylated
R14399 T27593 T27594 advmod tyrosine,phosphorylated
R14400 T27603 T27604 advmod freshly,isolated
R14401 T27594 T27592 attr phosphorylated,be
R14402 T27604 T27605 amod isolated,PB
R14403 T27605 T27602 pobj PB,in
R14404 T27595 T27594 advmod persistently,phosphorylated
R14405 T27606 T27605 cc and,PB
R14406 T27607 T27605 conj ST,PB
R14407 T27596 T27594 punct (,phosphorylated
R14408 T27608 T27609 compound CD4,+
R14409 T27609 T27590 advcl +,found
R14410 T27610 T27611 compound T,cells
R14411 T27597 T27599 quantmod up,6
R14412 T27611 T27609 dobj cells,+
R14413 T27612 T27609 prep from,+
R14414 T27598 T27599 quantmod to,6
R14415 T27613 T27614 compound RA,patients
R14416 T27614 T27612 pobj patients,from
R14417 T27615 T27590 punct .,found
R14418 T27599 T27600 nummod 6,hours
R14422 T27600 T27594 appos hours,phosphorylated

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T24037 35-43 Positive_regulation denotes mediated
T24036 93-107 Phosphorylation denotes phosphorylated
T24035 50-60 Positive_regulation denotes activation
T24034 167-170 Protein denotes CD4
T24033 62-67 Protein denotes STAT3
T24032 44-49 Protein denotes STAT3
T24031 29-34 Protein denotes IL-10
R11458 T24031 T24037 causeOf IL-10,mediated
R11459 T24032 T24035 themeOf STAT3,activation
R11460 T24033 T24036 themeOf STAT3,phosphorylated
R11461 T24035 T24037 themeOf activation,mediated

test3

Id Subject Object Predicate Lexical cue
T22599 167-170 Protein denotes CD4
T22598 93-107 Phosphorylation denotes phosphorylated
T22597 62-67 Protein denotes STAT3
T22596 50-60 Positive_regulation denotes activation
T22595 44-49 Protein denotes STAT3
T22594 35-43 Positive_regulation denotes mediated
T22593 29-34 Protein denotes IL-10
T22592 20-28 Negative_regulation denotes impaired
T22332 167-170 Protein denotes CD4
T22331 62-67 Protein denotes STAT3
T22330 44-49 Protein denotes STAT3
T22329 29-34 Protein denotes IL-10
R11056 T22593 T22594 causeOf IL-10,mediated
R11057 T22594 T22592 themeOf mediated,impaired
R11058 T22595 T22596 themeOf STAT3,activation
R11059 T22596 T22594 themeOf activation,mediated
R11060 T22597 T22598 themeOf STAT3,phosphorylated

testone

Id Subject Object Predicate Lexical cue
T21799 167-170 Protein denotes CD4
T21798 62-67 Protein denotes STAT3
T21797 44-49 Protein denotes STAT3
T21796 29-34 Protein denotes IL-10
T21980 93-107 Phosphorylation denotes phosphorylated
T21979 84-92 Entity denotes tyrosine
T21978 50-60 Positive_regulation denotes activation
T21977 35-43 Positive_regulation denotes mediated
T21976 20-28 Negative_regulation denotes impaired
T21975 3-14 Binding denotes association
R10883 T21796 T21977 causeOf IL-10,mediated
R10884 T21797 T21978 themeOf STAT3,activation
R10885 T21798 T21980 themeOf STAT3,phosphorylated
R10967 T21977 T21976 themeOf mediated,impaired
R10968 T21978 T21977 themeOf activation,mediated
R10969 T21979 T21980 themeOf tyrosine,phosphorylated