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PMC:1064873 / 123-436 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T96 0-1 NN denotes T
T97 2-7 NNS denotes cells
T98 8-12 IN denotes from
T99 13-21 NNS denotes patients
T100 22-26 IN denotes with
T101 27-37 NN denotes rheumatoid
T102 38-47 NN denotes arthritis
T430 73-78 OCCURRENCE denotes shown
T429 82-87 I_ACTION denotes block
T420 179-184 OCCURRENCE denotes found
T419 285-292 OCCURRENCE denotes produce
T417 137-147 OCCURRENCE denotes inhibiting
T391 282-284 country_code denotes to
T390 176-178 stop denotes We
T389 134-136 country_code denotes by
T388 79-81 country_code denotes to
T387 58-60 state denotes IL
T149 309-311 IN denotes of
T148 301-308 NNS denotes amounts
T147 293-300 JJR denotes greater
T146 285-292 VB denotes produce
T145 282-284 TO denotes to
T144 277-281 JJ denotes able
T143 272-276 VBD denotes were
T142 270-271 ) denotes )
T141 268-270 NNP denotes RA
T140 267-268 ( denotes (
T139 257-266 NN denotes arthritis
T138 246-256 NN denotes rheumatoid
T137 239-245 JJ denotes active
T136 234-238 IN denotes with
T135 225-233 NNS denotes patients
T134 220-224 IN denotes from
T133 214-219 NNS denotes cells
T132 212-213 NN denotes T
T131 210-211 NN denotes +
T130 209-210 CD denotes 4
T129 207-209 NNP denotes CD
T128 201-206 NN denotes blood
T127 190-200 JJ denotes peripheral
T126 185-189 IN denotes that
T125 179-184 VBD denotes found
T124 176-178 PRP denotes We
T123 174-175 . denotes .
T122 167-174 NN denotes pathway
T121 157-166 VBG denotes signaling
T120 154-156 CD denotes 28
T119 152-154 NNP denotes CD
T118 148-151 DT denotes the
T117 137-147 VBG denotes inhibiting
T116 134-136 IN denotes by
T115 125-133 NN denotes response
T114 116-124 NN denotes cytokine
T113 111-115 NN denotes cell
T112 109-111 NNP denotes T-
T111 92-108 JJ denotes antigen-specific
T110 88-91 DT denotes the
T109 82-87 VB denotes block
T108 79-81 TO denotes to
T107 73-78 VBN denotes shown
T106 68-72 VBN denotes been
T105 64-67 VBZ denotes has
T104 61-63 CD denotes 10
T103 58-61 NNP denotes IL-

biosemtest

Id Subject Object Predicate Lexical cue
T510 2-7 UMLS/C1269647 denotes cells
T532 13-21 UMLS/C1578485 denotes patients
T537 13-21 UMLS/C1578484 denotes patients
T542 13-21 UMLS/C1578486 denotes patients
T547 13-21 UMLS/C1578481 denotes patients
T551 13-21 UMLS/C1578480 denotes patients
T555 13-21 UMLS/C1578483 denotes patients
T559 2-7 UMLS/C1704653 denotes cells
T562 13-21 UMLS/C1578479 denotes patients
T582 13-21 UMLS/C0030705 denotes patients
T630 27-47 UMLS/C0003873 denotes rheumatoid arthritis
T638 2-7 UMLS/C1948049 denotes cells
T650 2-7 UMLS/C1136359 denotes cells
T749 13-21 UMLS/C1550655 denotes patients
T827 13-21 UMLS/C1705908 denotes patients
T840 2-7 UMLS/C0007634 denotes cells
T879 152-156 UMLS/C1332709 denotes CD28
T876 92-99 UMLS/C0003320 denotes antigen
T861 301-308 UMLS/C1265611 denotes amounts
T844 152-156 UMLS/C1426202 denotes CD28
T828 225-233 UMLS/C1705908 denotes patients
T826 100-108 UMLS/C1552740 denotes specific
T808 179-184 UMLS/C0243095 denotes found
T788 293-300 UMLS/C1704243 denotes greater
T722 293-300 UMLS/C0205393 denotes greater
T721 64-67 UMLS/C2348947 denotes has
T716 239-245 UMLS/C1553875 denotes active
T701 212-219 UMLS/C0039194 denotes T cells
T700 109-115 UMLS/C0039194 denotes T-cell
T698 100-108 UMLS/C0205369 denotes specific
T690 190-206 UMLS/C0229664 denotes peripheral blood
T688 152-156 UMLS/C0075747 denotes CD28
T678 58-63 UMLS/C1149215 denotes IL-10
T632 277-281 UMLS/C0085732 denotes able
T631 246-266 UMLS/C0003873 denotes rheumatoid arthritis
T612 58-63 UMLS/C1522550 denotes IL-10
T605 58-63 UMLS/C1334098 denotes IL-10
T596 116-124 UMLS/C1524094 denotes cytokine
T583 225-233 UMLS/C0030705 denotes patients
T572 277-281 UMLS/C1299581 denotes able
T563 225-233 UMLS/C1578479 denotes patients
T556 225-233 UMLS/C1578483 denotes patients
T552 225-233 UMLS/C1578480 denotes patients
T548 225-233 UMLS/C1578481 denotes patients
T543 225-233 UMLS/C1578486 denotes patients
T538 225-233 UMLS/C1578484 denotes patients
T536 82-87 UMLS/C0332206 denotes block
T533 225-233 UMLS/C1578485 denotes patients
T528 82-87 UMLS/C1706084 denotes block
T524 239-245 UMLS/C1561511 denotes active
T523 239-245 UMLS/C1561512 denotes active
T522 239-245 UMLS/C1561513 denotes active
T519 125-133 UMLS/C1704632 denotes response
T517 157-174 UMLS/C0086982 denotes signaling pathway
T516 301-308 UMLS/C1561574 denotes amounts
T515 82-87 UMLS/C1533157 denotes block
T512 239-245 UMLS/C0205177 denotes active
T462 239-245 UMLS/C1561510 denotes active
T461 82-87 UMLS/C0233660 denotes block
T460 239-245 UMLS/C1561509 denotes active
T459 239-245 UMLS/C1561508 denotes active
T458 239-245 UMLS/C1561507 denotes active
T443 239-245 UMLS/C1547419 denotes active
T442 116-124 UMLS/C0079189 denotes cytokine
T441 125-133 UMLS/C0871261 denotes response
T439 293-300 UMLS/C0549177 denotes greater
T768 179-184 UMLS/C0037088 denotes found
T765 125-133 UMLS/C1706817 denotes response
T760 157-174 UMLS/C0037080 denotes signaling pathway
T750 225-233 UMLS/C1550655 denotes patients
T731 137-147 UMLS/C0021469 denotes inhibiting
T505 239-245 UMLS/C2347179 denotes active
T495 58-63 UMLS/C0085295 denotes IL-10
T483 282-284 UMLS/C0319022 denotes to
T482 79-81 UMLS/C0319022 denotes to
T478 82-87 UMLS/C0028778 denotes block

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1171 2-7 NN denotes cells
T1172 8-12 IN denotes from
T1173 13-21 NN denotes patients
T1174 22-26 IN denotes with
T1175 27-37 JJ denotes rheumatoid
T1176 38-47 NN denotes arthritis
T1217 309-311 IN denotes of
T1216 301-308 NN denotes amounts
T1215 293-300 JJ denotes greater
T1214 285-292 VB denotes produce
T1213 282-284 TO denotes to
T1212 277-281 JJ denotes able
T1211 272-276 VB denotes were
T1210 270-271 -RRB- denotes )
T1209 268-270 NN denotes RA
T1208 267-268 -LRB- denotes (
T1207 257-266 NN denotes arthritis
T1206 246-256 JJ denotes rheumatoid
T1205 239-245 JJ denotes active
T1204 234-238 IN denotes with
T1203 225-233 NN denotes patients
T1202 220-224 IN denotes from
T1201 214-219 NN denotes cells
T1200 212-213 NN denotes T
T1199 207-211 JJ denotes CD4+
T1198 201-206 NN denotes blood
T1197 190-200 JJ denotes peripheral
T1196 185-189 IN denotes that
T1195 179-184 VB denotes found
T1194 176-178 PRP denotes We
T1193 167-174 NN denotes pathway
T1192 157-166 NN denotes signaling
T1191 152-156 NN denotes CD28
T1190 148-151 DT denotes the
T1189 137-147 VB denotes inhibiting
T1188 134-136 IN denotes by
T1187 125-133 NN denotes response
T1186 116-124 NN denotes cytokine
T1185 109-115 NN denotes T-cell
T1184 92-108 JJ denotes antigen-specific
T1183 88-91 DT denotes the
T1182 82-87 VB denotes block
T1181 79-81 TO denotes to
T1180 73-78 VB denotes shown
T1179 68-72 VB denotes been
T1178 64-67 VB denotes has
T1177 58-63 NN denotes IL-10
R63 T1171 T1172 arg1Of cells,from
R64 T1173 T1172 arg2Of patients,from
R65 T1173 T1174 arg1Of patients,with
R66 T1176 T1174 arg2Of arthritis,with
R67 T1176 T1175 arg1Of arthritis,rheumatoid
R68 T1177 T1178 arg1Of IL-10,has
R69 T1177 T1179 arg1Of IL-10,been
R70 T1177 T1180 arg2Of IL-10,shown
R71 T1177 T1182 arg1Of IL-10,block
R72 T1177 T1189 arg1Of IL-10,inhibiting
R73 T1180 T1178 arg2Of shown,has
R74 T1180 T1179 arg2Of shown,been
R75 T1182 T1180 arg3Of block,shown
R76 T1182 T1181 arg1Of block,to
R77 T1182 T1188 arg1Of block,by
R78 T1187 T1182 arg2Of response,block
R79 T1187 T1183 arg1Of response,the
R80 T1187 T1184 arg1Of response,antigen-specific
R81 T1187 T1185 arg1Of response,T-cell
R82 T1187 T1186 arg1Of response,cytokine
R83 T1189 T1188 arg2Of inhibiting,by
R84 T1193 T1189 arg2Of pathway,inhibiting
R85 T1193 T1190 arg1Of pathway,the
R86 T1193 T1191 arg1Of pathway,CD28
R87 T1193 T1192 arg1Of pathway,signaling
R88 T1194 T1195 arg1Of We,found
R89 T1201 T1197 arg1Of cells,peripheral
R90 T1201 T1198 arg1Of cells,blood
R91 T1201 T1199 arg1Of cells,CD4+
R92 T1201 T1200 arg1Of cells,T
R93 T1201 T1202 arg1Of cells,from
R94 T1201 T1211 arg1Of cells,were
R95 T1201 T1212 arg1Of cells,able
R96 T1201 T1214 arg1Of cells,produce
R97 T1203 T1202 arg2Of patients,from
R98 T1203 T1204 arg1Of patients,with
R99 T1207 T1204 arg2Of arthritis,with
R100 T1207 T1205 arg1Of arthritis,active
R101 T1207 T1206 arg1Of arthritis,rheumatoid
R102 T1207 T1208 arg1Of arthritis,(
R103 T1209 T1208 arg2Of RA,(
R104 T1210 T1208 arg3Of ),(
R105 T1211 T1195 arg2Of were,found
R106 T1211 T1196 arg1Of were,that
R107 T1212 T1211 arg2Of able,were
R108 T1214 T1212 arg2Of produce,able
R109 T1214 T1213 arg1Of produce,to
R112 T1216 T1214 arg2Of amounts,produce
R113 T1216 T1215 arg1Of amounts,greater
R114 T1216 T1217 arg1Of amounts,of

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T971 58-63 Protein denotes IL-10
T972 152-156 Protein denotes CD28
T973 207-210 Protein denotes CD4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1049 152-156 http://www.uniprot.org/uniprot/P10747 denotes CD28
T1030 58-63 http://www.uniprot.org/uniprot/P22301 denotes IL-10
T1041 207-210 http://www.uniprot.org/uniprot/P01730 denotes CD4

UBERON-AE

Id Subject Object Predicate Lexical cue
T434 201-206 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

GO-BP

Id Subject Object Predicate Lexical cue
T906 157-174 http://purl.obolibrary.org/obo/GO_0007165 denotes signaling pathway
T905 116-133 http://purl.obolibrary.org/obo/GO_0034097 denotes cytokine response
T904 109-124 http://purl.obolibrary.org/obo/GO_0002369 denotes T-cell cytokine
T899 157-166 http://purl.obolibrary.org/obo/GO_0023052 denotes signaling

GO-CC

Id Subject Object Predicate Lexical cue
T1015 214-219 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T1014 2-7 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T999 58-63 http://purl.obolibrary.org/obo/GO_0005141 denotes IL-10

sentences

Id Subject Object Predicate Lexical cue
T883 58-175 Sentence denotes IL-10 has been shown to block the antigen-specific T-cell cytokine response by inhibiting the CD28 signaling pathway.
T2 49-57 Sentence denotes Abstract
T3 58-175 Sentence denotes IL-10 has been shown to block the antigen-specific T-cell cytokine response by inhibiting the CD28 signaling pathway.

ICD10

Id Subject Object Predicate Lexical cue
T1025 27-47 http://purl.bioontology.org/ontology/ICD10/M06.9 denotes rheumatoid arthritis
T1027 38-47 http://purl.bioontology.org/ontology/ICD10/M13.9 denotes arthritis
T1026 246-266 http://purl.bioontology.org/ontology/ICD10/M06.9 denotes rheumatoid arthritis
T1028 257-266 http://purl.bioontology.org/ontology/ICD10/M13.9 denotes arthritis

simple1

Id Subject Object Predicate Lexical cue
T1126 58-63 Protein denotes IL-10
T1127 152-156 Protein denotes CD28
T1128 207-210 Protein denotes CD4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T1928 207-210 Protein denotes CD4
T1924 152-156 Protein denotes CD28
T1923 58-63 Protein denotes IL-10
T1955 285-292 Gene_expression denotes produce

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T1450 285-292 Gene_expression denotes produce
T1424 207-210 Protein denotes CD4
T1420 152-156 Protein denotes CD28
T1419 58-63 Protein denotes IL-10

DLUT931

Id Subject Object Predicate Lexical cue
T1495 285-292 Gene_expression denotes produce
T1469 207-210 Protein denotes CD4
T1465 152-156 Protein denotes CD28
T1464 58-63 Protein denotes IL-10

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T1887 0-7 Entity denotes T cells
T1907 88-134 Localization denotes the antigen-specific T-cell cytokine response
T1905 92-108 Entity denotes antigen-specific
T1903 212-271 Entity denotes T cells from patients with active rheumatoid arthritis (RA)
T1893 152-156 Protein denotes CD28
T1881 109-115 Entity denotes T-cell
T1871 88-133 Protein denotes the antigen-specific T-cell cytokine response
T1870 58-63 Protein denotes IL-10
T1868 268-270 Protein denotes RA
T1866 207-210 Protein denotes CD4
R612 T1871 T1907 themeOf the antigen-specific T-cell cytokine response,the antigen-specific T-cell cytokine response
R617 T1881 T1907 locationOf T-cell,the antigen-specific T-cell cytokine response

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1566 0-1 NNP denotes T
T1567 2-7 NNS denotes cells
T1568 8-12 IN denotes from
T1569 13-21 NNS denotes patients
T1615 309-311 IN denotes of
T1614 301-308 NNS denotes amounts
T1613 293-300 JJR denotes greater
T1612 285-292 VB denotes produce
T1611 282-284 TO denotes to
T1610 277-281 JJ denotes able
T1609 272-276 VBD denotes were
T1608 270-271 -RRB- denotes )
T1607 268-270 NNP denotes RA
T1606 267-268 -LRB- denotes (
T1605 257-266 NNS denotes arthritis
T1604 246-256 JJ denotes rheumatoid
T1603 239-245 JJ denotes active
T1602 234-238 IN denotes with
T1601 225-233 NNS denotes patients
T1600 220-224 IN denotes from
T1576 73-78 VBN denotes shown
T1570 22-26 IN denotes with
T1571 27-37 JJ denotes rheumatoid
T1572 38-47 NNS denotes arthritis
T1573 58-63 NNP denotes IL-10
T1574 64-67 VBZ denotes has
T1575 68-72 VBN denotes been
T1577 79-81 TO denotes to
T1578 82-87 VB denotes block
T1579 88-91 DT denotes the
T1580 92-108 JJ denotes antigen-specific
T1581 109-115 NN denotes T-cell
T1582 116-124 NN denotes cytokine
T1583 125-133 NN denotes response
T1584 134-136 IN denotes by
T1585 137-147 VBG denotes inhibiting
T1586 148-151 DT denotes the
T1587 152-156 NNP denotes CD28
T1588 157-166 VBG denotes signaling
T1589 167-174 NN denotes pathway
T1590 174-175 . denotes .
T1591 176-178 PRP denotes We
T1592 179-184 VBD denotes found
T1593 185-189 IN denotes that
T1594 190-200 JJ denotes peripheral
T1595 201-206 NN denotes blood
T1596 207-210 NNP denotes CD4
T1597 210-211 NNP denotes +
T1598 212-213 NNP denotes T
T1599 214-219 NNS denotes cells
R369 T1566 T1567 compound T,cells
R371 T1568 T1567 prep from,cells
R372 T1569 T1568 pobj patients,from
R373 T1600 T1599 prep from,cells
R374 T1601 T1600 pobj patients,from
R375 T1602 T1601 prep with,patients
R376 T1603 T1605 amod active,arthritis
R377 T1604 T1605 amod rheumatoid,arthritis
R378 T1605 T1602 pobj arthritis,with
R379 T1606 T1605 punct (,arthritis
R380 T1607 T1605 appos RA,arthritis
R381 T1608 T1605 punct ),arthritis
R382 T1609 T1592 ccomp were,found
R383 T1610 T1609 acomp able,were
R384 T1611 T1612 aux to,produce
R385 T1612 T1610 xcomp produce,able
R386 T1613 T1614 amod greater,amounts
R387 T1614 T1612 dobj amounts,produce
R388 T1615 T1614 prep of,amounts
R681 T1570 T1569 prep with,patients
R682 T1571 T1572 compound rheumatoid,arthritis
R683 T1572 T1570 pobj arthritis,with
R684 T1573 T1576 nsubjpass IL-10,shown
R685 T1574 T1576 aux has,shown
R686 T1575 T1576 auxpass been,shown
R687 T1576 T1576 ROOT shown,shown
R688 T1577 T1578 aux to,block
R689 T1578 T1576 xcomp block,shown
R690 T1579 T1583 det the,response
R691 T1580 T1583 amod antigen-specific,response
R692 T1581 T1583 compound T-cell,response
R693 T1582 T1583 compound cytokine,response
R694 T1583 T1578 dobj response,block
R695 T1584 T1578 prep by,block
R696 T1585 T1584 pcomp inhibiting,by
R697 T1586 T1587 det the,CD28
R698 T1587 T1585 dobj CD28,inhibiting
R699 T1588 T1585 conj signaling,inhibiting
R700 T1589 T1588 dobj pathway,signaling
R701 T1590 T1576 punct .,shown
R702 T1591 T1592 nsubj We,found
R703 T1592 T1592 ROOT found,found
R704 T1593 T1609 mark that,were
R705 T1594 T1595 amod peripheral,blood
R706 T1595 T1599 compound blood,cells
R707 T1596 T1599 compound CD4,cells
R708 T1597 T1599 compound +,cells
R709 T1598 T1599 compound T,cells
R710 T1599 T1609 nsubj cells,were

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1094 58-63 Protein denotes IL-10
T1095 152-156 Protein denotes CD28
T1096 137-147 Negative_regulation denotes inhibiting
T1097 207-211 Protein denotes CD4+
T1103 285-292 Gene_expression denotes produce
T1104 285-292 Gene_expression denotes produce
T1105 301-308 Gene_expression denotes amounts
R653 T1094 T1096 causeOf IL-10,inhibiting
R654 T1095 T1096 themeOf CD28,inhibiting

testone

Id Subject Object Predicate Lexical cue
T65 285-292 Gene_expression denotes produce
T38 207-210 Protein denotes CD4
T37 152-156 Protein denotes CD28
T36 58-63 Protein denotes IL-10