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PMC:1064873 / 11394-12083 JSONTXT

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LappsTest

Id Subject Object Predicate Lexical cue
T9321 505-523 Protein denotes Taq DNA polymerase
T9320 214-264 Protein denotes Molony murine leukemia virus reverse transcriptase
T9319 38-45 Protein denotes PB CD4+

biosemtest

Id Subject Object Predicate Lexical cue
T9722 481-489 UMLS/C1114821 denotes reaction
T9720 94-97 UMLS/C0812225 denotes kit
T9719 77-80 UMLS/C0812225 denotes kit
T9718 94-97 UMLS/C1704742 denotes kit
T9717 77-80 UMLS/C1704742 denotes kit
T9712 674-678 UMLS/C0006556 denotes cDNA
T9711 173-177 UMLS/C0006556 denotes cDNA
T9710 159-171 UMLS/C1442085 denotes instructions
T9706 626-637 UMLS/C0011900 denotes Diagnostics
T9705 423-434 UMLS/C0011900 denotes Diagnostics
T9704 144-158 UMLS/C1546933 denotes manufacturer's
T9697 328-335 UMLS/C0072149 denotes Promega
T9686 199-204 UMLS/C0439810 denotes total
T9685 0-5 UMLS/C0439810 denotes Total
T9684 494-504 UMLS/C0332256 denotes containing
T9680 243-264 UP/P21329 denotes reverse transcriptase
T9679 67-76 UMLS/C0204727 denotes isolation
T9664 6-14 UMLS/C0007634 denotes cellular
T9656 643-651 UMLS/C1552740 denotes specific
T9655 546-554 UMLS/C1552740 denotes specific
T9653 595-598 UMLS/C0012854 denotes DNA
T9652 494-504 UMLS/C2700400 denotes containing
T9642 144-158 UMLS/C1705426 denotes manufacturer's
T9639 494-504 UMLS/C1549781 denotes containing
T9638 481-489 UMLS/C0443286 denotes reaction
T9635 127-136 UMLS/C0680240 denotes according
T9634 243-264 UMLS/C0035379 denotes reverse transcriptase
T9627 243-264 UP/P23070 denotes reverse transcriptase
T9626 144-158 UMLS/C0947322 denotes manufacturer's
T9624 67-76 UMLS/C1547129 denotes isolation
T9613 23-32 UMLS/C1555707 denotes extracted
T9612 665-670 UMLS/C1883712 denotes added
T9611 505-523 UMLS/C2257065 denotes Taq DNA polymerase
T9610 46-53 UMLS/C0039194 denotes T cells
T9607 643-651 UMLS/C0205369 denotes specific
T9606 546-554 UMLS/C0205369 denotes specific
T9590 159-171 UMLS/C0039401 denotes instructions
T9588 490-493 UMLS/C1720722 denotes mix
T9586 243-264 UP/Q95SX7 denotes reverse transcriptase
T9576 23-32 UMLS/C0185115 denotes extracted
T9568 464-475 UMLS/C1280521 denotes capillaries
T9561 665-670 UMLS/C1524062 denotes added
T9559 159-171 UMLS/C0220931 denotes instructions
T9558 159-171 UMLS/C1292796 denotes instructions
T9434 67-76 UMLS/C0205409 denotes isolation
T9431 282-291 UMLS/C0454845 denotes Cleveland
T9415 205-208 UMLS/C1325819 denotes RNA
T9414 63-66 UMLS/C1325819 denotes RNA
T9413 221-242 UMLS/C0026626 denotes murine leukemia virus
T9412 15-18 UMLS/C1325819 denotes RNA
T9408 356-369 UMLS/C1709846 denotes Real-time PCR
T9403 350-353 UMLS/C0041703 denotes USA
T9402 297-300 UMLS/C0041703 denotes USA
T9401 121-124 UMLS/C0041703 denotes USA
T9400 458-463 UMLS/C1947936 denotes glass
T9398 599-605 UMLS/C0444649 denotes Master
T9397 67-76 UMLS/C1608300 denotes isolation
T9392 67-76 UMLS/C1608299 denotes isolation
T9389 665-670 UMLS/C1720086 denotes added
T9388 67-76 UMLS/C1548355 denotes isolation
T9380 679-688 UMLS/C0079240 denotes dilutions
T9379 243-264 UP/Q9NBX4 denotes reverse transcriptase
T9378 458-463 UMLS/C0025611 denotes glass
T9375 671-673 UMLS/C0319022 denotes to
T9374 137-139 UMLS/C0319022 denotes to
T9366 626-637 UMLS/C1547424 denotes Diagnostics
T9365 423-434 UMLS/C1547424 denotes Diagnostics
T9364 652-659 UMLS/C0206415 denotes primers
T9363 319-326 UMLS/C0206415 denotes primers
T9362 205-208 UMLS/C0035668 denotes RNA
T9361 63-66 UMLS/C0035668 denotes RNA
T9360 15-18 UMLS/C0035668 denotes RNA
T9359 243-264 UP/P21328 denotes reverse transcriptase
T9358 94-97 UMLS/C1705212 denotes kit
T9357 77-80 UMLS/C1705212 denotes kit
T9356 107-115 UMLS/C1217267 denotes Valencia
T9554 6-14 UMLS/C0178539 denotes cellular
T9553 679-688 UMLS/C1948037 denotes dilutions
T9552 606-618 UMLS/C0386577 denotes SYBR Green I
T9551 555-567 UMLS/C0386577 denotes SYBR Green I
T9546 405-415 UMLS/C0348000 denotes Instrument
T9545 89-93 UMLS/C0445542 denotes Mini
T9544 464-475 UMLS/C0006901 denotes capillaries
T9543 243-264 UP/P23072 denotes reverse transcriptase
T9542 199-204 UMLS/C0439175 denotes total
T9541 0-5 UMLS/C0439175 denotes Total
T9540 513-531 UMLS/C0012892 denotes polymerase and DNA
T9532 464-475 UMLS/C0935624 denotes capillaries
T9531 626-637 UMLS/C0348026 denotes Diagnostics
T9529 423-434 UMLS/C0348026 denotes Diagnostics
T9511 23-32 UMLS/C1705851 denotes extracted
T9510 182-193 UMLS/C1883254 denotes synthesized
T9509 652-659 UMLS/C1279901 denotes primers
T9507 319-326 UMLS/C1279901 denotes primers
T9499 269-280 UMLS/C0205474 denotes Biochemical
T9497 144-158 UMLS/C1548599 denotes manufacturer's
T9496 94-97 UMLS/C1690540 denotes kit
T9495 77-80 UMLS/C1690540 denotes kit
T9494 374-383 UMLS/C0884358 denotes performed
T9486 67-76 UMLS/C0220862 denotes isolation
T9485 94-97 UMLS/C1553450 denotes kit
T9483 77-80 UMLS/C1553450 denotes kit
T9482 446-453 UMLS/C0017480 denotes Germany
T9478 652-659 UMLS/C0205435 denotes primers
T9477 319-326 UMLS/C0205435 denotes primers
T9473 243-264 UP/P23071 denotes reverse transcriptase
T9471 458-463 UMLS/C0017596 denotes glass
T9470 568-571 UMLS/C0013343 denotes dye
T9465 490-493 UMLS/C0205430 denotes mix
T9464 505-523 UMLS/C0075813 denotes Taq DNA polymerase
T9458 458-463 UMLS/C0015421 denotes glass
T9454 374-383 UMLS/C1550369 denotes performed
T9450 595-598 UMLS/C1325786 denotes DNA
T9441 159-171 UMLS/C0302828 denotes instructions

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9941 679-688 NN denotes dilutions
T9940 674-678 NN denotes cDNA
T9939 671-673 TO denotes to
T9938 665-670 VB denotes added
T9937 660-664 VB denotes were
T9936 652-659 NN denotes primers
T9935 643-651 JJ denotes specific
T9934 639-642 CC denotes and
T9933 637-638 -RRB- denotes )
T9932 626-637 NNP denotes Diagnostics
T9931 620-625 NNP denotes Roche
T9930 618-619 -COLON- denotes ;
T9929 617-618 NNP denotes I
T9928 611-616 NNP denotes Green
T9927 606-610 NNP denotes SYBR
T9926 599-605 NNP denotes Master
T9925 595-598 NN denotes DNA
T9924 585-594 NNP denotes FastStart
T9923 573-584 NNP denotes Lightcycler
T9922 572-573 -LRB- denotes (
T9921 568-571 NN denotes dye
T9920 566-567 CD denotes I
T9919 560-565 NNP denotes Green
T9918 555-559 NN denotes SYBR
T9917 532-554 JJ denotes double-strand-specific
T9916 528-531 NN denotes DNA
T9915 524-527 CC denotes and
T9914 513-523 NN denotes polymerase
T9913 509-512 NN denotes DNA
T9912 505-508 NN denotes Taq
T9911 494-504 VB denotes containing
T9910 490-493 NN denotes mix
T9909 481-489 NN denotes reaction
T9908 477-480 DT denotes The
T9907 464-475 NN denotes capillaries
T9906 458-463 NN denotes glass
T9905 455-457 IN denotes in
T9904 453-454 -RRB- denotes )
T9903 446-453 NNP denotes Germany
T9902 444-445 -COMMA- denotes ,
T9901 436-444 NNP denotes Penzberg
T9900 434-435 -COMMA- denotes ,
T9899 423-434 NNP denotes Diagnostics
T9898 417-422 NNP denotes Roche
T9897 416-417 -LRB- denotes (
T9896 405-415 NNP denotes Instrument
T9895 393-404 NNP denotes LightCycler
T9894 389-392 DT denotes the
T9893 384-388 IN denotes with
T9892 374-383 VB denotes performed
T9891 370-373 VB denotes was
T9890 366-369 NN denotes PCR
T9889 356-365 JJ denotes Real-time
T9888 353-354 -RRB- denotes )
T9887 350-353 NNP denotes USA
T9886 348-349 -COMMA- denotes ,
T9885 346-348 NNP denotes WI
T9884 344-345 -COMMA- denotes ,
T9883 337-344 NNP denotes Madison
T9882 335-336 -COMMA- denotes ,
T9881 328-335 NNP denotes Promega
T9880 327-328 -LRB- denotes (
T9879 319-326 NN denotes primers
T9878 316-318 CD denotes 15
T9877 315-316 -RRB- denotes )
T9876 313-315 NN denotes dT
T9875 312-313 -LRB- denotes (
T9874 306-312 NN denotes oligo-
T9873 302-305 CC denotes and
T9872 300-301 -RRB- denotes )
T9871 297-300 NNP denotes USA
T9870 295-296 -COMMA- denotes ,
T9869 293-295 NNP denotes OH
T9868 291-292 -COMMA- denotes ,
T9867 282-291 NNP denotes Cleveland
T9866 280-281 -COMMA- denotes ,
T9865 269-280 NNP denotes Biochemical
T9864 266-268 NNP denotes US
T9863 265-266 -LRB- denotes (
T9862 251-264 NN denotes transcriptase
T9861 243-250 JJ denotes reverse
T9860 237-242 NN denotes virus
T9859 228-236 NN denotes leukemia
T9858 221-227 JJ denotes murine
T9857 214-220 NNP denotes Molony
T9856 209-213 IN denotes with
T9855 205-208 NN denotes RNA
T9854 199-204 JJ denotes total
T9853 194-198 IN denotes from
T9852 182-193 VB denotes synthesized
T9851 178-181 VB denotes was
T9850 173-177 NN denotes cDNA
T9849 159-172 NN denotes instructions.
T9848 156-158 POS denotes 's
T9847 144-156 NN denotes manufacturer
T9846 140-143 DT denotes the
T9845 137-139 TO denotes to
T9844 127-136 VB denotes according
T9843 125-126 -COMMA- denotes ,
T9842 124-125 -RRB- denotes )
T9841 121-124 NNP denotes USA
T9840 119-120 -COMMA- denotes ,
T9839 117-119 NNP denotes CA
T9838 115-116 -COMMA- denotes ,
T9837 107-115 NNP denotes Valencia
T9836 105-106 -COMMA- denotes ,
T9835 99-105 NNP denotes Qiagen
T9834 97-98 -COLON- denotes ;
T9833 94-97 NN denotes kit
T9832 89-93 NNP denotes Mini
T9831 82-88 NNP denotes RNeasy
T9830 81-82 -LRB- denotes (
T9829 77-80 NN denotes kit
T9828 67-76 NN denotes isolation
T9827 63-66 NN denotes RNA
T9826 60-62 DT denotes an
T9825 54-59 VB denotes using
T9824 48-53 NN denotes cells
T9823 46-47 NN denotes T
T9822 41-45 JJ denotes CD4+
T9821 38-40 NN denotes PB
T9820 33-37 IN denotes from
T9819 23-32 VB denotes extracted
T9818 19-22 VB denotes was
T9817 15-18 NN denotes RNA
T9816 6-14 JJ denotes cellular
T9815 0-5 JJ denotes Total
R4796 T9817 T9815 arg1Of RNA,Total
R4797 T9817 T9816 arg1Of RNA,cellular
R4798 T9817 T9818 arg1Of RNA,was
R4799 T9817 T9819 arg2Of RNA,extracted
R4800 T9819 T9818 arg2Of extracted,was
R4801 T9819 T9820 arg1Of extracted,from
R4802 T9824 T9820 arg2Of cells,from
R4803 T9824 T9821 arg1Of cells,PB
R4804 T9824 T9822 arg1Of cells,CD4+
R4805 T9824 T9823 arg1Of cells,T
R4806 T9824 T9825 arg1Of cells,using
R4807 T9824 T9851 modOf cells,was
R4808 T9825 T9830 arg1Of using,(
R4809 T9825 T9843 arg1Of using,","
R4810 T9825 T9844 arg1Of using,according
R4811 T9829 T9825 arg2Of kit,using
R4812 T9829 T9826 arg1Of kit,an
R4813 T9829 T9827 arg1Of kit,RNA
R4814 T9829 T9828 arg1Of kit,isolation
R4815 T9832 T9831 arg1Of Mini,RNeasy
R4816 T9833 T9832 arg1Of kit,Mini
R4817 T9833 T9834 arg1Of kit,;
R4818 T9834 T9830 arg2Of ;,(
R4819 T9834 T9840 arg1Of ;,","
R4820 T9834 T9841 arg1Of ;,USA
R4821 T9835 T9836 arg1Of Qiagen,","
R4822 T9836 T9838 arg1Of ",",","
R4823 T9837 T9836 arg2Of Valencia,","
R4824 T9838 T9834 arg2Of ",",;
R4825 T9839 T9838 arg2Of CA,","
R4826 T9842 T9830 arg3Of ),(
R4827 T9845 T9844 arg2Of to,according
R4828 T9848 T9845 arg2Of 's,to
R4829 T9848 T9846 arg1Of 's,the
R4830 T9848 T9847 arg1Of 's,manufacturer
R4831 T9848 T9849 arg1Of 's,instructions.
R4832 T9850 T9851 arg1Of cDNA,was
R4833 T9850 T9852 arg2Of cDNA,synthesized
R4834 T9852 T9851 arg2Of synthesized,was
R4835 T9852 T9853 arg1Of synthesized,from
R4836 T9852 T9856 arg1Of synthesized,with
R4837 T9855 T9853 arg2Of RNA,from
R4838 T9855 T9854 arg1Of RNA,total
R4839 T9862 T9857 arg1Of transcriptase,Molony
R4840 T9862 T9858 arg1Of transcriptase,murine
R4841 T9862 T9859 arg1Of transcriptase,leukemia
R4842 T9862 T9860 arg1Of transcriptase,virus
R4843 T9862 T9861 arg1Of transcriptase,reverse
R4844 T9862 T9863 arg1Of transcriptase,(
R4845 T9862 T9873 arg1Of transcriptase,and
R4846 T9865 T9864 arg1Of Biochemical,US
R4847 T9865 T9866 arg1Of Biochemical,","
R4848 T9866 T9868 arg1Of ",",","
R4849 T9867 T9866 arg2Of Cleveland,","
R4850 T9868 T9863 arg2Of ",",(
R4851 T9868 T9870 arg1Of ",",","
R4852 T9868 T9871 arg1Of ",",USA
R4853 T9869 T9868 arg2Of OH,","
R4854 T9872 T9863 arg3Of ),(
R4855 T9873 T9856 arg2Of and,with
R4856 T9876 T9875 arg2Of dT,(
R4857 T9877 T9875 arg3Of ),(
R4858 T9879 T9873 arg2Of primers,and
R4859 T9879 T9874 arg1Of primers,oligo-
R4860 T9879 T9875 arg1Of primers,(
R4861 T9879 T9878 arg1Of primers,15
R4862 T9879 T9880 arg1Of primers,(
R4863 T9881 T9882 arg1Of Promega,","
R4864 T9882 T9884 arg1Of ",",","
R4865 T9883 T9882 arg2Of Madison,","
R4866 T9884 T9880 arg2Of ",",(
R4867 T9884 T9886 arg1Of ",",","
R4868 T9884 T9887 arg1Of ",",USA
R4869 T9885 T9884 arg2Of WI,","
R4870 T9888 T9880 arg3Of ),(
R4871 T9890 T9889 arg1Of PCR,Real-time
R4872 T9890 T9891 arg1Of PCR,was
R4873 T9890 T9892 arg2Of PCR,performed
R4874 T9892 T9891 arg2Of performed,was
R4875 T9892 T9893 arg1Of performed,with
R4876 T9896 T9893 arg2Of Instrument,with
R4877 T9896 T9894 arg1Of Instrument,the
R4878 T9896 T9895 arg1Of Instrument,LightCycler
R4879 T9896 T9897 arg1Of Instrument,(
R4880 T9896 T9905 arg1Of Instrument,in
R4881 T9899 T9897 arg2Of Diagnostics,(
R4882 T9899 T9898 arg1Of Diagnostics,Roche
R4883 T9899 T9900 arg1Of Diagnostics,","
R4884 T9901 T9900 arg2Of Penzberg,","
R4885 T9901 T9902 arg1Of Penzberg,","
R4886 T9903 T9902 arg2Of Germany,","
R4887 T9904 T9897 arg3Of ),(
R4888 T9907 T9905 arg2Of capillaries,in
R4889 T9907 T9906 arg1Of capillaries,glass
R4890 T9910 T9908 arg1Of mix,The
R4891 T9910 T9909 arg1Of mix,reaction
R4892 T9910 T9911 arg1Of mix,containing
R4893 T9910 T9937 arg1Of mix,were
R4894 T9910 T9938 arg2Of mix,added
R4895 T9914 T9912 arg1Of polymerase,Taq
R4896 T9914 T9913 arg1Of polymerase,DNA
R4897 T9914 T9915 arg1Of polymerase,and
R4898 T9915 T9934 arg1Of and,and
R4899 T9919 T9920 arg1Of Green,I
R4900 T9921 T9915 arg2Of dye,and
R4901 T9921 T9916 arg1Of dye,DNA
R4902 T9921 T9917 arg1Of dye,double-strand-specific
R4903 T9921 T9918 arg1Of dye,SYBR
R4904 T9921 T9919 arg1Of dye,Green
R4905 T9921 T9922 arg1Of dye,(
R4906 T9924 T9923 arg1Of FastStart,Lightcycler
R4907 T9929 T9925 arg1Of I,DNA
R4908 T9929 T9926 arg1Of I,Master
R4909 T9929 T9927 arg1Of I,SYBR
R4910 T9929 T9928 arg1Of I,Green
R4911 T9929 T9930 arg1Of I,;
R4912 T9930 T9922 arg2Of ;,(
R4913 T9930 T9924 arg1Of ;,FastStart
R4914 T9932 T9930 arg2Of Diagnostics,;
R4915 T9932 T9931 arg1Of Diagnostics,Roche
R4916 T9933 T9922 arg3Of ),(
R4917 T9934 T9911 arg2Of and,containing
R4918 T9936 T9934 arg2Of primers,and
R4919 T9936 T9935 arg1Of primers,specific
R4920 T9938 T9937 arg2Of added,were
R4921 T9938 T9939 arg1Of added,to
R4922 T9941 T9939 arg2Of dilutions,to
R4923 T9941 T9940 arg1Of dilutions,cDNA

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9751 505-508 Protein denotes Taq
T9750 41-44 Protein denotes CD4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9791 41-44 http://www.uniprot.org/uniprot/P01730 denotes CD4

UBERON-AE

Id Subject Object Predicate Lexical cue
T9355 464-475 http://purl.obolibrary.org/obo/UBERON_0001982 denotes capillaries

GO-BP

Id Subject Object Predicate Lexical cue
T9735 251-264 http://purl.obolibrary.org/obo/GO_0034062 denotes transcriptase
T9734 251-264 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T9733 251-264 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T9732 117-119 http://purl.obolibrary.org/obo/GO_0033968 denotes CA
T9731 6-14 http://purl.obolibrary.org/obo/GO_0007349 denotes cellular

GO-CC

Id Subject Object Predicate Lexical cue
T9765 48-53 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

GO-MF

Id Subject Object Predicate Lexical cue
T9764 251-264 http://purl.obolibrary.org/obo/GO_0034062 denotes transcriptase
T9763 251-264 http://purl.obolibrary.org/obo/GO_0003968 denotes transcriptase
T9762 251-264 http://purl.obolibrary.org/obo/GO_0003899 denotes transcriptase
T9761 117-119 http://purl.obolibrary.org/obo/GO_0033968 denotes CA

sentences

Id Subject Object Predicate Lexical cue
T9726 477-689 Sentence denotes The reaction mix containing Taq DNA polymerase and DNA double-strand-specific SYBR Green I dye (Lightcycler FastStart DNA Master SYBR Green I; Roche Diagnostics) and specific primers were added to cDNA dilutions.
T9725 356-476 Sentence denotes Real-time PCR was performed with the LightCycler Instrument (Roche Diagnostics, Penzberg, Germany) in glass capillaries.
T9724 0-355 Sentence denotes Total cellular RNA was extracted from PB CD4+ T cells using an RNA isolation kit (RNeasy Mini kit; Qiagen, Valencia, CA, USA), according to the manufacturer's instructions. cDNA was synthesized from total RNA with Molony murine leukemia virus reverse transcriptase (US Biochemical, Cleveland, OH, USA) and oligo-(dT)15 primers (Promega, Madison, WI, USA).
T70 0-355 Sentence denotes Total cellular RNA was extracted from PB CD4+ T cells using an RNA isolation kit (RNeasy Mini kit; Qiagen, Valencia, CA, USA), according to the manufacturer's instructions. cDNA was synthesized from total RNA with Molony murine leukemia virus reverse transcriptase (US Biochemical, Cleveland, OH, USA) and oligo-(dT)15 primers (Promega, Madison, WI, USA).
T71 356-476 Sentence denotes Real-time PCR was performed with the LightCycler Instrument (Roche Diagnostics, Penzberg, Germany) in glass capillaries.
T72 477-689 Sentence denotes The reaction mix containing Taq DNA polymerase and DNA double-strand-specific SYBR Green I dye (Lightcycler FastStart DNA Master SYBR Green I; Roche Diagnostics) and specific primers were added to cDNA dilutions.

simple1

Id Subject Object Predicate Lexical cue
T9799 505-508 Protein denotes Taq
T9798 41-44 Protein denotes CD4

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10537 505-508 Protein denotes Taq
T10536 41-44 Protein denotes CD4

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10114 505-508 Protein denotes Taq
T10113 41-44 Protein denotes CD4

DLUT931

Id Subject Object Predicate Lexical cue
T10470 505-508 Protein denotes Taq
T10469 41-44 Protein denotes CD4

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10533 312-318 Entity denotes (dT)15
T10532 585-594 Entity denotes FastStart
T10531 505-508 Protein denotes Taq
T10530 505-523 Protein denotes Taq DNA polymerase
T10529 199-208 Protein denotes total RNA
T10528 528-531 Entity denotes DNA
T10527 595-618 Entity denotes DNA Master SYBR Green I
T10524 595-618 Entity denotes DNA Master SYBR Green I
T10520 63-66 Protein denotes RNA
T10519 356-369 Protein denotes Real-time PCR
T10514 38-80 Entity denotes PB CD4+ T cells using an RNA isolation kit
T10511 528-567 Entity denotes DNA double-strand-specific SYBR Green I
T10510 214-264 Protein denotes Molony murine leukemia virus reverse transcriptase
T10509 38-40 Protein denotes PB

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10264 688-689 . denotes .
T10228 464-475 NNS denotes capillaries
T10227 458-463 NN denotes glass
T10226 455-457 IN denotes in
T10225 453-454 -RRB- denotes )
T10224 446-453 NNP denotes Germany
T10223 444-445 , denotes ,
T10222 436-444 NNP denotes Penzberg
T10221 434-435 , denotes ,
T10220 423-434 NNPS denotes Diagnostics
T10219 417-422 NNP denotes Roche
T10218 416-417 -LRB- denotes (
T10217 405-415 NNP denotes Instrument
T10216 393-404 NNP denotes LightCycler
T10215 389-392 DT denotes the
T10214 384-388 IN denotes with
T10213 374-383 VBN denotes performed
T10212 370-373 VBD denotes was
T10211 366-369 NNP denotes PCR
T10210 356-365 JJ denotes Real-time
T10209 354-355 . denotes .
T10208 353-354 -RRB- denotes )
T10207 350-353 NNP denotes USA
T10206 348-349 , denotes ,
T10205 346-348 NNP denotes WI
T10204 344-345 , denotes ,
T10203 337-344 NNP denotes Madison
T10202 335-336 , denotes ,
T10201 328-335 NNP denotes Promega
T10200 327-328 -LRB- denotes (
T10199 319-326 NNS denotes primers
T10198 316-318 CD denotes 15
T10197 315-316 -RRB- denotes )
T10196 313-315 NN denotes dT
T10195 312-313 -LRB- denotes (
T10194 311-312 : denotes -
T10193 306-311 SYM denotes oligo
T10192 302-305 CC denotes and
T10191 300-301 -RRB- denotes )
T10190 297-300 NNP denotes USA
T10189 295-296 , denotes ,
T10188 293-295 NNP denotes OH
T10187 291-292 , denotes ,
T10186 282-291 NNP denotes Cleveland
T10185 280-281 , denotes ,
T10184 269-280 NNP denotes Biochemical
T10183 266-268 NNP denotes US
T10182 265-266 -LRB- denotes (
T10181 251-264 NN denotes transcriptase
T10180 243-250 VB denotes reverse
T10179 237-242 NN denotes virus
T10178 228-236 NN denotes leukemia
T10177 221-227 NN denotes murine
T10176 214-220 NNP denotes Molony
T10175 209-213 IN denotes with
T10174 205-208 NNP denotes RNA
T10173 199-204 JJ denotes total
T10172 194-198 IN denotes from
T10171 182-193 VBN denotes synthesized
T10170 178-181 VBD denotes was
T10169 173-177 NNP denotes cDNA
T10168 171-172 . denotes .
T10167 159-171 NNS denotes instructions
T10166 156-158 POS denotes 's
T10165 144-156 NN denotes manufacturer
T10164 140-143 DT denotes the
T10163 137-139 TO denotes to
T10162 127-136 VBG denotes according
T10161 125-126 , denotes ,
T10160 124-125 -RRB- denotes )
T10159 121-124 NNP denotes USA
T10158 119-120 , denotes ,
T10157 117-119 NNP denotes CA
T10156 115-116 , denotes ,
T10155 107-115 NNP denotes Valencia
T10154 105-106 , denotes ,
T10153 99-105 NNP denotes Qiagen
T10152 97-98 : denotes ;
T10151 94-97 NN denotes kit
T10150 89-93 NNP denotes Mini
T10149 82-88 NNP denotes RNeasy
T10148 81-82 -LRB- denotes (
T10147 77-80 NN denotes kit
T10146 67-76 NN denotes isolation
T10145 63-66 NNP denotes RNA
T10144 60-62 DT denotes an
T10143 54-59 VBG denotes using
T10142 48-53 NNS denotes cells
T10141 46-47 NNP denotes T
T10140 44-45 VBD denotes +
T10139 41-44 NNP denotes CD4
T10138 38-40 NNP denotes PB
T10137 33-37 IN denotes from
T10136 23-32 VBN denotes extracted
T10135 19-22 VBD denotes was
T10134 15-18 NNP denotes RNA
T10133 6-14 JJ denotes cellular
T10132 0-5 NNP denotes Total
T10263 679-688 NNS denotes dilutions
T10262 674-678 NNP denotes cDNA
T10261 671-673 TO denotes to
T10260 665-670 VBN denotes added
T10259 660-664 VBD denotes were
T10258 652-659 NNS denotes primers
T10257 643-651 JJ denotes specific
T10256 639-642 CC denotes and
T10255 637-638 -RRB- denotes )
T10254 626-637 NNPS denotes Diagnostics
T10253 620-625 NNP denotes Roche
T10252 618-619 : denotes ;
T10251 617-618 PRP denotes I
T10250 611-616 NNP denotes Green
T10249 606-610 NNP denotes SYBR
T10248 599-605 NNP denotes Master
T10247 595-598 NNP denotes DNA
T10246 585-594 NNP denotes FastStart
T10245 573-584 NNP denotes Lightcycler
T10244 572-573 -LRB- denotes (
T10243 568-571 VBP denotes dye
T10242 566-567 PRP denotes I
T10241 560-565 NNP denotes Green
T10240 555-559 NNP denotes SYBR
T10239 532-554 JJ denotes double-strand-specific
T10238 528-531 NN denotes DNA
T10237 524-527 CC denotes and
T10236 513-523 NN denotes polymerase
T10235 509-512 NNP denotes DNA
T10234 505-508 NNP denotes Taq
T10233 494-504 VBG denotes containing
T10232 490-493 NN denotes mix
T10231 481-489 NN denotes reaction
T10230 477-480 DT denotes The
T10229 475-476 . denotes .
R5114 T10132 T10134 compound Total,RNA
R5115 T10133 T10134 amod cellular,RNA
R5117 T10135 T10136 auxpass was,extracted
R5118 T10136 T10136 ROOT extracted,extracted
R5119 T10137 T10136 prep from,extracted
R5120 T10138 T10139 compound PB,CD4
R5121 T10139 T10137 pobj CD4,from
R5122 T10140 T10136 advmod +,extracted
R5123 T10141 T10142 compound T,cells
R5124 T10142 T10140 dobj cells,+
R5125 T10143 T10140 advcl using,+
R5126 T10144 T10147 det an,kit
R5127 T10145 T10147 compound RNA,kit
R5128 T10146 T10147 compound isolation,kit
R5129 T10147 T10143 dobj kit,using
R5130 T10148 T10147 punct (,kit
R5131 T10149 T10150 compound RNeasy,Mini
R5132 T10150 T10151 compound Mini,kit
R5133 T10151 T10147 appos kit,kit
R5134 T10152 T10147 punct ;,kit
R5135 T10153 T10147 appos Qiagen,kit
R5136 T10154 T10153 punct ",",Qiagen
R5137 T10155 T10153 conj Valencia,Qiagen
R5138 T10156 T10155 punct ",",Valencia
R5139 T10157 T10155 conj CA,Valencia
R5140 T10158 T10157 punct ",",CA
R5141 T10159 T10157 conj USA,CA
R5142 T10160 T10157 punct ),CA
R5143 T10161 T10140 punct ",",+
R5144 T10162 T10140 prep according,+
R5145 T10163 T10162 prep to,according
R5146 T10164 T10165 det the,manufacturer
R5147 T10165 T10167 poss manufacturer,instructions
R5148 T10166 T10165 case 's,manufacturer
R5149 T10167 T10163 pobj instructions,to
R5150 T10168 T10136 punct .,extracted
R5151 T10169 T10171 nsubjpass cDNA,synthesized
R5152 T10170 T10171 auxpass was,synthesized
R5153 T10171 T10171 ROOT synthesized,synthesized
R5154 T10172 T10171 prep from,synthesized
R5155 T10173 T10174 amod total,RNA
R5156 T10174 T10172 pobj RNA,from
R5157 T10175 T10174 prep with,RNA
R5158 T10176 T10179 compound Molony,virus
R5159 T10177 T10179 compound murine,virus
R5160 T10178 T10179 compound leukemia,virus
R5161 T10179 T10175 pobj virus,with
R5162 T10180 T10171 prep reverse,synthesized
R5163 T10181 T10180 npadvmod transcriptase,reverse
R5164 T10182 T10184 punct (,Biochemical
R5165 T10183 T10184 compound US,Biochemical
R5166 T10184 T10181 appos Biochemical,transcriptase
R5167 T10185 T10184 punct ",",Biochemical
R5168 T10186 T10184 appos Cleveland,Biochemical
R5169 T10187 T10186 punct ",",Cleveland
R5170 T10188 T10186 conj OH,Cleveland
R5171 T10189 T10188 punct ",",OH
R5172 T10190 T10188 conj USA,OH
R5173 T10191 T10188 punct ),OH
R5174 T10192 T10188 cc and,OH
R5175 T10193 T10184 punct oligo,Biochemical
R5176 T10194 T10193 punct -,oligo
R5177 T10195 T10196 punct (,dT
R5178 T10196 T10199 nmod dT,primers
R5179 T10197 T10196 punct ),dT
R5180 T10198 T10199 nummod 15,primers
R5181 T10199 T10184 appos primers,Biochemical
R5182 T10200 T10201 punct (,Promega
R5183 T10201 T10184 appos Promega,Biochemical
R5184 T10202 T10201 punct ",",Promega
R5185 T10203 T10201 conj Madison,Promega
R5186 T10204 T10203 punct ",",Madison
R5187 T10205 T10203 conj WI,Madison
R5188 T10206 T10205 punct ",",WI
R5189 T10207 T10205 conj USA,WI
R5190 T10208 T10201 punct ),Promega
R5191 T10209 T10171 punct .,synthesized
R5192 T10210 T10211 compound Real-time,PCR
R5193 T10211 T10213 nsubjpass PCR,performed
R5194 T10212 T10213 auxpass was,performed
R5195 T10213 T10213 ROOT performed,performed
R5196 T10214 T10213 prep with,performed
R5197 T10215 T10217 det the,Instrument
R5198 T10216 T10217 compound LightCycler,Instrument
R5199 T10217 T10214 pobj Instrument,with
R5200 T10218 T10217 punct (,Instrument
R5201 T10219 T10220 compound Roche,Diagnostics
R5202 T10220 T10217 conj Diagnostics,Instrument
R5203 T10221 T10220 punct ",",Diagnostics
R5204 T10222 T10220 conj Penzberg,Diagnostics
R5205 T10223 T10222 punct ",",Penzberg
R5206 T10224 T10222 appos Germany,Penzberg
R5207 T10225 T10222 punct ),Penzberg
R5208 T10226 T10213 prep in,performed
R5209 T10227 T10228 compound glass,capillaries
R5210 T10228 T10226 pobj capillaries,in
R5211 T10229 T10213 punct .,performed
R5212 T10230 T10232 det The,mix
R5213 T10231 T10232 compound reaction,mix
R5214 T10232 T10260 nsubjpass mix,added
R5215 T10233 T10232 acl containing,mix
R5216 T10234 T10236 compound Taq,polymerase
R5217 T10235 T10236 compound DNA,polymerase
R5218 T10236 T10233 dobj polymerase,containing
R5219 T10237 T10236 cc and,polymerase
R5220 T10238 T10241 compound DNA,Green
R5221 T10239 T10241 compound double-strand-specific,Green
R5222 T10240 T10241 compound SYBR,Green
R5223 T10241 T10232 appos Green,mix
R5224 T10242 T10243 nsubj I,dye
R5225 T10243 T10232 relcl dye,mix
R5226 T10244 T10243 punct (,dye
R5227 T10245 T10246 compound Lightcycler,FastStart
R5228 T10246 T10250 compound FastStart,Green
R5229 T10247 T10250 compound DNA,Green
R5230 T10248 T10250 compound Master,Green
R5231 T10249 T10250 compound SYBR,Green
R5232 T10250 T10260 nsubjpass Green,added
R5233 T10251 T10250 nmod I,Green
R5234 T10252 T10254 punct ;,Diagnostics
R5235 T10253 T10254 compound Roche,Diagnostics
R5236 T10254 T10250 appos Diagnostics,Green
R5237 T10255 T10254 punct ),Diagnostics
R5238 T10256 T10254 cc and,Diagnostics
R5239 T10257 T10258 amod specific,primers
R5240 T10258 T10254 conj primers,Diagnostics
R5241 T10259 T10260 auxpass were,added
R5242 T10260 T10260 ROOT added,added
R5243 T10261 T10260 prep to,added
R5244 T10262 T10263 compound cDNA,dilutions
R5245 T10263 T10261 pobj dilutions,to
R5246 T10264 T10260 punct .,added

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9778 505-523 Protein denotes Taq DNA polymerase
T9777 243-264 Protein denotes reverse transcriptase

test3

Id Subject Object Predicate Lexical cue
T9343 505-508 Protein denotes Taq
T9342 41-44 Protein denotes CD4
T9332 505-508 Protein denotes Taq
T9331 41-44 Protein denotes CD4

testone

Id Subject Object Predicate Lexical cue
T9307 505-508 Protein denotes Taq
T9306 41-44 Protein denotes CD4