BB-norm+ner@ldeleger:BB-norm+ner-25634638 JSONTXT

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bionlp-ost-19-BB-norm-ner-train

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-99 Title denotes Real-time monitoring of hydrogen cyanide (HCN) and ammonia (NH₃) emitted by Pseudomonas aeruginosa.
T2 100-1302 Paragraph denotes We present the real-time monitoring of hydrogen cyanide (HCN) production from Pseudomonas aeruginosa (P. aeruginosa) strains in vitro, using laser-based photoacoustic spectroscopy. Simultaneously, the production of ammonia (NH3) was measured, and the influence of different factors (e.g. the medium, temperature and antibiotics treatment) was assessed. Both reference strains and clinical isolates of patients with CF were studied, and compared to other pathogens commonly present in lungs/airways of CF patients. Hydrogen cyanide production starts to rise as soon as P. aeruginosa bacteria reach the stationary phase ((9.0-9.5) × 10(9) colony forming units, CFUs), up to concentrations of 14.5 microliters per hour (µl h(-1)). Different strains of P. aeruginosa produced HCN to varying degrees, and addition of tobramycin strongly reduced HCN production within 2 h from application. Burkholderia cepacia also produced HCN (up to 0.35µl h(-1) in 9.0  ×  10(9) CFU) while other pathogens (Aspergillus fumigatus, Stenotrophomonas maltophilia, Mycobacterium abscessus) did not produce detectable levels. Our study reveals for the first time a broad overview of the dynamics of the HCN production in vitro.
T3 24-72 Phenotype denotes hydrogen cyanide (HCN) and ammonia (NH₃) emitted OBT:000019
T4 76-98 Microorganism denotes Pseudomonas aeruginosa 287
T5 139-172 Phenotype denotes hydrogen cyanide (HCN) production OBT:000019
T6 178-200 Microorganism denotes Pseudomonas aeruginosa 287
T7 202-215 Microorganism denotes P. aeruginosa 287
T8 301-328 Phenotype denotes production of ammonia (NH3) OBT:000019
T9 480-488 Habitat denotes clinical OBT:003220
T10 501-517 Habitat denotes patients with CF OBT:003220
T11 554-563 Phenotype denotes pathogens OBT:002806
T12-0 584-589 _FRAGMENT denotes lungs OBT:000716
T12-1 598-612 Habitat denotes of CF patients
T13 590-612 Habitat denotes airways of CF patients OBT:000408
T14 601-612 Habitat denotes CF patients OBT:003220
T15 614-641 Phenotype denotes Hydrogen cyanide production OBT:000019
T16 668-681 Microorganism denotes P. aeruginosa 287
T17 849-862 Microorganism denotes P. aeruginosa 1276719
T18 863-875 Phenotype denotes produced HCN OBT:000019
T19 940-954 Phenotype denotes HCN production OBT:000019
T20 984-1004 Microorganism denotes Burkholderia cepacia 292
T21 1010-1022 Phenotype denotes produced HCN OBT:000019
T22 1077-1086 Phenotype denotes pathogens OBT:000375
T23 1088-1109 Microorganism denotes Aspergillus fumigatus 746128
T24 1111-1139 Microorganism denotes Stenotrophomonas maltophilia 40324
T25 1141-1164 Microorganism denotes Mycobacterium abscessus 36809
T26 1278-1292 Phenotype denotes HCN production OBT:000019
C-T12-0 T12-1 T12-0 _lexicallyChainedTo of CF patients,lungs