BB-norm+ner@ldeleger:BB-norm+ner-19622846 JSONTXT

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bionlp-ost-19-BB-norm-ner-train

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 0-94 Title denotes Detection of Staphylococcus aureus including MRSA on environmental surfaces in a jail setting.
T2 95-964 Paragraph denotes We examined jail environmental surfaces to explore whether they might serve as reservoirs of viable methicillin-resistant Staphylococcus aureus (MRSA). We swabbed 132 surfaces, inoculated primary and secondary mannitol salts and oxacillin-resistant screening agar, and used API tests to identify S. aureus and E-tests to determine methicillin/oxacillin resistance. We recovered S. aureus from 10 (7.6%) surfaces; eight (6.1%) isolates were MRSA. We ran pulsed-field gel electrophoresis on six resistant isolates and observed three patterns, one of which was identical to that identified in a previous study of inmates' nasal specimens. Finding MRSA-contaminated surfaces on a variety of environmental surfaces in the absence of an overt outbreak emphasizes that correctional facilities should have protocols for environmental cleaning as a component of MRSA prevention.
T3 13-34 Microorganism denotes Staphylococcus aureus 1280
T4 45-49 Microorganism denotes MRSA 1280
T5 45-49 Phenotype denotes MRSA OBT:002817
T6 53-93 Habitat denotes environmental surfaces in a jail setting OBT:000006
T7 81-85 Habitat denotes jail OBT:000695
T9 107-134 Habitat denotes jail environmental surfaces OBT:000006
T8 107-111 Habitat denotes jail OBT:000695
T10 195-216 Phenotype denotes methicillin-resistant OBT:002817
T11 217-238 Microorganism denotes Staphylococcus aureus 1280
T12 240-244 Microorganism denotes MRSA 1280
T13 240-244 Phenotype denotes MRSA OBT:002817
T14 283-319 Habitat denotes primary and secondary mannitol salts OBT:000007
T15 324-358 Habitat denotes oxacillin-resistant screening agar OBT:000041|OBT:000031
T16 324-343 Phenotype denotes oxacillin-resistant OBT:002920
T17 391-400 Microorganism denotes S. aureus 1280
T18-0 426-437 _FRAGMENT denotes methicillin OBT:002817
T18-1 448-458 Phenotype denotes resistance
T19 438-458 Phenotype denotes oxacillin resistance OBT:002920
T20 473-482 Microorganism denotes S. aureus 1280
T21 535-539 Microorganism denotes MRSA 1280
T22 535-539 Phenotype denotes MRSA OBT:002817
T23 588-597 Phenotype denotes resistant OBT:002817|OBT:002920
T24 705-719 Habitat denotes inmates' nasal OBT:000767
T25 705-712 Habitat denotes inmates OBT:003291
T26 739-743 Microorganism denotes MRSA 1280
T27 739-743 Phenotype denotes MRSA OBT:002817
T28 857-880 Habitat denotes correctional facilities OBT:000695
T29 948-952 Microorganism denotes MRSA 1280
T30 948-952 Phenotype denotes MRSA OBT:002817
C-T18-0 T18-1 T18-0 _lexicallyChainedTo resistance,methicillin