BB-norm+ner@ldeleger:BB-norm+ner-19175621 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/BB-norm+ner@ldeleger/sourceid/BB-norm+ner-19175621","sourcedb":"BB-norm+ner@ldeleger","sourceid":"BB-norm+ner-19175621","text":"Occurrence of extended-spectrum beta-lactamase-producing Salmonella enterica in northern Spain with evidence of CTX-M-9 clonal spread among animals and humans.\nAmong the 1233 Salmonella enterica isolates obtained in two Spanish hospitals, five isolates (0.4%) (serovars: Virchow, four; Livingstone, one) had the phenotype of an extended-spectrum beta-lactamase (ESBL) producer. The genetic characterization of the ESBL of S. enterica Livingstone revealed a bla(SHV-2) gene. The bla(CTX-M-10) gene in a phage-related genetic environment was found in one S. enterica Virchow isolate, and the bla(CTX-M-9) gene within the In60 integron was found in the three remaining Virchow isolates. These three isolates presented indistinguishable or closely related pulsed-field gel electrophoresis patterns among themselves and also as compared with the two other bla(CTX-M-9)-containing isolates previously obtained from animals. ESBL production is an emerging mechanism of resistance in S. enterica in the two studied hospitals.\n\n","tracks":[{"project":"bionlp-ost-19-BB-norm-ner-train","denotations":[{"id":"T1","span":{"begin":0,"end":159},"obj":"Title"},{"id":"T2","span":{"begin":160,"end":1017},"obj":"Paragraph"},{"id":"T3","span":{"begin":32,"end":56},"obj":"Phenotype"},{"id":"T4","span":{"begin":57,"end":76},"obj":"Microorganism"},{"id":"T5","span":{"begin":140,"end":147},"obj":"Habitat"},{"id":"T6","span":{"begin":152,"end":158},"obj":"Habitat"},{"id":"T7","span":{"begin":175,"end":194},"obj":"Microorganism"},{"id":"T8","span":{"begin":220,"end":237},"obj":"Habitat"},{"id":"T9","span":{"begin":271,"end":278},"obj":"Microorganism"},{"id":"T10","span":{"begin":286,"end":297},"obj":"Microorganism"},{"id":"T11","span":{"begin":328,"end":376},"obj":"Phenotype"},{"id":"T12","span":{"begin":422,"end":445},"obj":"Microorganism"},{"id":"T13","span":{"begin":553,"end":572},"obj":"Microorganism"},{"id":"T14","span":{"begin":666,"end":673},"obj":"Microorganism"},{"id":"T15","span":{"begin":909,"end":916},"obj":"Habitat"},{"id":"T16","span":{"begin":918,"end":933},"obj":"Phenotype"},{"id":"T17","span":{"begin":962,"end":972},"obj":"Phenotype"},{"id":"T18","span":{"begin":976,"end":987},"obj":"Microorganism"},{"id":"T19","span":{"begin":1007,"end":1016},"obj":"Habitat"}],"attributes":[{"id":"A7","pred":"NCBI_Taxonomy","subj":"T9","obj":"48409"},{"id":"A5","pred":"NCBI_Taxonomy","subj":"T7","obj":"28901"},{"id":"A15","pred":"OntoBiotope","subj":"T17","obj":"OBT:000598"},{"id":"A6","pred":"OntoBiotope","subj":"T8","obj":"OBT:002714"},{"id":"A16","pred":"NCBI_Taxonomy","subj":"T18","obj":"28901"},{"id":"A3","pred":"OntoBiotope","subj":"T5","obj":"OBT:000193"},{"id":"A13","pred":"OntoBiotope","subj":"T15","obj":"OBT:000193"},{"id":"A11","pred":"NCBI_Taxonomy","subj":"T13","obj":"48409"},{"id":"A10","pred":"NCBI_Taxonomy","subj":"T12","obj":"260680"},{"id":"A12","pred":"NCBI_Taxonomy","subj":"T14","obj":"48409"},{"id":"A17","pred":"OntoBiotope","subj":"T19","obj":"OBT:002714"},{"id":"A14","pred":"OntoBiotope","subj":"T16","obj":"OBT:000019"},{"id":"A4","pred":"OntoBiotope","subj":"T6","obj":"OBT:002488"},{"id":"A2","pred":"NCBI_Taxonomy","subj":"T4","obj":"28901"},{"id":"A9","pred":"OntoBiotope","subj":"T11","obj":"OBT:000019"},{"id":"A8","pred":"NCBI_Taxonomy","subj":"T10","obj":"260680"},{"id":"A1","pred":"OntoBiotope","subj":"T3","obj":"OBT:000019"},{"subj":"T1","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T2","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T3","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T4","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T5","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T6","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T7","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T8","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T9","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T10","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T11","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T12","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T13","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T14","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T15","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T16","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T17","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T18","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"},{"subj":"T19","pred":"source","obj":"bionlp-ost-19-BB-norm-ner-train"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"bionlp-ost-19-BB-norm-ner-train","color":"#ec939a","default":true}]}]}}