BB-kb+ner@ldeleger:BB-kb+ner-F-23224222-004 JSONTXT

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bionlp-ost-19-BB-kb-ner-train

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue NCBI_Taxonomy OntoBiotope
T1 18-31 Phenotype denotes Gram-positive OBT:000649
T2 32-46 Microorganism denotes Actinobacteria 1760
T3 52-73 Microorganism denotes Corynebacterium casei 160386
T4 81-93 Microorganism denotes C. variabile 1727
T5 142-161 Habitat denotes cheese from dairy A OBT:001480
T6 154-159 Habitat denotes dairy OBT:001988
T7 198-225 Microorganism denotes Brachybacterium alimentarum 47845
T8 235-249 Microorganism denotes Brevibacterium 1696
T9 276-303 Habitat denotes cheeses from the farmhouses OBT:001480
T10 293-303 Habitat denotes farmhouses OBT:000583
T11 305-312 Habitat denotes dairies OBT:001988
T12 326-337 Microorganism denotes B. permense 234834
T13 355-374 Habitat denotes cheese from dairy A OBT:001480
T14 367-372 Habitat denotes dairy OBT:001988
T15 376-385 Microorganism denotes B. linens 1703
T16 403-422 Habitat denotes cheese from dairy B OBT:001480
T17 415-420 Habitat denotes dairy OBT:001988
T18 427-441 Microorganism denotes B. aurantiacum 273384
T19 459-478 Habitat denotes cheese from dairy C OBT:001480
T20 471-476 Habitat denotes dairy OBT:001988
T21 480-500 Microorganism denotes Brevibacterium spp. 1696
T22 530-549 Habitat denotes cheese from dairy D OBT:001480
T23 542-547 Habitat denotes dairy OBT:001988
T24 577-595 Phenotype denotes coagulase negative OBT:000235
T25 596-609 Microorganism denotes staphylococci 1279
T26 628-656 Microorganism denotes Staphylococcus saprophyticus 29385
T28 664-686 Habitat denotes cheeses from dairies B OBT:001480
T27-0 664-684 _FRAGMENT denotes cheeses from dairies OBT:001480
T27-1 691-692 Habitat denotes D
T29 677-684 Habitat denotes dairies OBT:001988
T30 698-712 Microorganism denotes Staph. equorum 246432
T31 720-742 Habitat denotes cheeses from dairies C OBT:001480
T32-0 720-740 _FRAGMENT denotes cheeses from dairies OBT:001480
T32-1 747-748 Habitat denotes D
T33 733-740 Habitat denotes dairies OBT:001988
T34 771-784 Phenotype denotes Gram-negative OBT:000648
T35 812-828 Microorganism denotes Proteus vulgaris 585
T36 833-853 Microorganism denotes Alcaligenes faecalis 511
T37 871-890 Habitat denotes cheese from dairy C OBT:001480
T38 883-888 Habitat denotes dairy OBT:001988
T39 927-951 Habitat denotes surface yeast microbiota OBT:000113
T40 957-982 Habitat denotes yeast surface microbiota OBT:000113
T42 996-1013 Habitat denotes farmhouse cheeses OBT:001480
T41 996-1005 Habitat denotes farmhouse OBT:000583
T43 1060-1066 Habitat denotes cheese OBT:001480
T44 1083-1099 Habitat denotes industrial dairy OBT:001988
T45 1101-1106 Habitat denotes dairy OBT:001988
T46 1151-1170 Habitat denotes cheese from dairy A OBT:001480
T47 1163-1168 Habitat denotes dairy OBT:001988
T48 1197-1216 Microorganism denotes Yarrowia lipolytica 4952
T49 1221-1247 Microorganism denotes Scopulariopsis brevicaulis 561152
T50 1253-1269 Habitat denotes yeast microbiota OBT:000113
T51 1273-1292 Habitat denotes cheese from dairy B OBT:001480
T52 1285-1290 Habitat denotes dairy OBT:001988
T53 1320-1335 Microorganism denotes Geotrichum spp. 43987
T54 1346-1369 Microorganism denotes Kluyveromyces marxianus 4911
T55 1374-1395 Microorganism denotes Debaryomyces hansenii 4959
T56 1442-1461 Habitat denotes cheese from dairy C OBT:001480
T57 1454-1459 Habitat denotes dairy OBT:001988
T58 1479-1490 Microorganism denotes D. hansenii 4959
T59 1520-1536 Microorganism denotes Geothrichum spp. 43987
T60 1550-1569 Habitat denotes cheese from dairy D OBT:001480
T61 1562-1567 Habitat denotes dairy OBT:001988
T62 1596-1607 Microorganism denotes D. hansenii 4959
E1 32-46 Exhibits denotes Actinobacteria
E2 52-73 Exhibits denotes Corynebacterium casei
E3 81-93 Exhibits denotes C. variabile
E4 198-225 Lives_In denotes Brachybacterium alimentarum
E5 235-249 Lives_In denotes Brevibacterium
E6 326-337 Lives_In denotes B. permense
E7 376-385 Lives_In denotes B. linens
E8 427-441 Lives_In denotes B. aurantiacum
E9 596-609 Exhibits denotes staphylococci
E10 628-656 Lives_In denotes Staphylococcus saprophyticus
E11 628-656 Lives_In denotes Staphylococcus saprophyticus
E12 628-656 Exhibits denotes Staphylococcus saprophyticus
E13 698-712 Lives_In denotes Staph. equorum
E14 698-712 Lives_In denotes Staph. equorum
E15 698-712 Exhibits denotes Staph. equorum
E16 812-828 Lives_In denotes Proteus vulgaris
E17 812-828 Exhibits denotes Proteus vulgaris
E18 833-853 Lives_In denotes Alcaligenes faecalis
E19 833-853 Exhibits denotes Alcaligenes faecalis
E20 1197-1216 Lives_In denotes Yarrowia lipolytica
E21 1221-1247 Lives_In denotes Scopulariopsis brevicaulis
E22 1320-1335 Lives_In denotes Geotrichum spp.
E23 1320-1335 Lives_In denotes Geotrichum spp.
E24 1346-1369 Lives_In denotes Kluyveromyces marxianus
E25 1346-1369 Lives_In denotes Kluyveromyces marxianus
E26 1374-1395 Lives_In denotes Debaryomyces hansenii
E27 1374-1395 Lives_In denotes Debaryomyces hansenii
E28 1479-1490 Lives_In denotes D. hansenii
E29 1520-1536 Lives_In denotes Geothrichum spp.
E30 1596-1607 Lives_In denotes D. hansenii
R1 E1 T2 Microorganism Actinobacteria,Actinobacteria
R2 E1 T1 Property Actinobacteria,Gram-positive
R3 E2 T3 Microorganism Corynebacterium casei,Corynebacterium casei
R4 E2 T1 Property Corynebacterium casei,Gram-positive
R5 E3 T4 Microorganism C. variabile,C. variabile
R6 E3 T1 Property C. variabile,Gram-positive
R7 E4 T7 Microorganism Brachybacterium alimentarum,Brachybacterium alimentarum
R8 E4 T5 Location Brachybacterium alimentarum,cheese from dairy A
R9 E5 T8 Microorganism Brevibacterium,Brevibacterium
R10 E5 T9 Location Brevibacterium,cheeses from the farmhouses
R11 E6 T12 Microorganism B. permense,B. permense
R12 E6 T13 Location B. permense,cheese from dairy A
R13 E7 T15 Microorganism B. linens,B. linens
R14 E7 T16 Location B. linens,cheese from dairy B
R15 E8 T18 Microorganism B. aurantiacum,B. aurantiacum
R16 E8 T19 Location B. aurantiacum,cheese from dairy C
R17 E9 T25 Microorganism staphylococci,staphylococci
R18 E9 T24 Property staphylococci,coagulase negative
R19 E10 T26 Microorganism Staphylococcus saprophyticus,Staphylococcus saprophyticus
R20 E10 T27-0 Location Staphylococcus saprophyticus,cheeses from dairies
R21 E11 T26 Microorganism Staphylococcus saprophyticus,Staphylococcus saprophyticus
R22 E11 T28 Location Staphylococcus saprophyticus,cheeses from dairies B
R23 E12 T26 Microorganism Staphylococcus saprophyticus,Staphylococcus saprophyticus
R24 E12 T24 Property Staphylococcus saprophyticus,coagulase negative
R25 E13 T30 Microorganism Staph. equorum,Staph. equorum
R26 E13 T32-0 Location Staph. equorum,cheeses from dairies
R27 E14 T30 Microorganism Staph. equorum,Staph. equorum
R28 E14 T31 Location Staph. equorum,cheeses from dairies C
R29 E15 T30 Microorganism Staph. equorum,Staph. equorum
R30 E15 T24 Property Staph. equorum,coagulase negative
R31 E16 T35 Microorganism Proteus vulgaris,Proteus vulgaris
R32 E16 T37 Location Proteus vulgaris,cheese from dairy C
R33 E17 T35 Microorganism Proteus vulgaris,Proteus vulgaris
R34 E17 T34 Property Proteus vulgaris,Gram-negative
R35 E18 T36 Microorganism Alcaligenes faecalis,Alcaligenes faecalis
R36 E18 T37 Location Alcaligenes faecalis,cheese from dairy C
R37 E19 T36 Microorganism Alcaligenes faecalis,Alcaligenes faecalis
R38 E19 T34 Property Alcaligenes faecalis,Gram-negative
R39 E20 T48 Microorganism Yarrowia lipolytica,Yarrowia lipolytica
R40 E20 T46 Location Yarrowia lipolytica,cheese from dairy A
R41 E21 T49 Microorganism Scopulariopsis brevicaulis,Scopulariopsis brevicaulis
R42 E21 T46 Location Scopulariopsis brevicaulis,cheese from dairy A
R43 E22 T53 Microorganism Geotrichum spp.,Geotrichum spp.
R44 E22 T51 Location Geotrichum spp.,cheese from dairy B
R45 E23 T53 Microorganism Geotrichum spp.,Geotrichum spp.
R46 E23 T50 Location Geotrichum spp.,yeast microbiota
R47 E24 T54 Microorganism Kluyveromyces marxianus,Kluyveromyces marxianus
R48 E24 T50 Location Kluyveromyces marxianus,yeast microbiota
R49 E25 T54 Microorganism Kluyveromyces marxianus,Kluyveromyces marxianus
R50 E25 T51 Location Kluyveromyces marxianus,cheese from dairy B
R51 E26 T55 Microorganism Debaryomyces hansenii,Debaryomyces hansenii
R52 E26 T50 Location Debaryomyces hansenii,yeast microbiota
R53 E27 T55 Microorganism Debaryomyces hansenii,Debaryomyces hansenii
R54 E27 T51 Location Debaryomyces hansenii,cheese from dairy B
R55 E28 T58 Microorganism D. hansenii,D. hansenii
R56 E28 T56 Location D. hansenii,cheese from dairy C
R57 E29 T59 Microorganism Geothrichum spp.,Geothrichum spp.
R58 E29 T56 Location Geothrichum spp.,cheese from dairy C
R59 E30 T62 Microorganism D. hansenii,D. hansenii
R60 E30 T60 Location D. hansenii,cheese from dairy D
C-T27-0 T27-1 T27-0 _lexicallyChainedTo D,cheeses from dairies
C-T32-0 T32-1 T32-0 _lexicallyChainedTo D,cheeses from dairies