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Jin-Dong Kim
User info
Collections
NameDescriptionUpdated at
11-12 / 12 show all
LitCoin-Test2021-12-23
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Projects
NameTDescription # Ann.Updated atStatus
101-110 / 160 show all
GO-CCAnnotation for cellular components as defined in the "Cellular Component" subtree of Gene Ontology17.6 K2023-11-30Developing
ICD10Annotation for disease names as defined in ICD101.6 K2023-11-29Developing
mondo_diseaseannotation for diseases and disorders as defined in MONDO. Automatic annotation by PD-MONDO.256 K2023-11-28Developing
EDAM-DFOannotation for EDAM terms for data, formats, and operations12.5 K2023-11-29Testing
EDAM-topicsannotation for EDAM topics11.6 K2023-11-29Testing
GlycoGenesannotation for glyco-genes based on GGDB1.01 K2023-11-29Developing
GO-MFAnnotation for molecular functions as defined in the "Molecular Function" subtree of Gene Ontology19.7 K2023-12-04Testing
NCBITAXONannotation for NCBI taxonomy. Automatic annotation by PD-NCBITaxon.502 K2023-11-24Developing
performance-testa project for performance test480 K2023-11-27Testing
GlyCosmos600-docsA random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.02023-11-29Released
Automatic annotators
NameDescription
21-30 / 39 show all
PD-NCBITaxon-B
PubTatorPubTator annotation provided by NCBI
PD-CHEBI-B
PD-GlycoGenes20190927-B
PD-GO-BP-BBiological Processes as defined in GO
PD-HP-B
PD-HP
PD-CLO-B
PD-HP-PA-B
PD-HP-PA
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.