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Jin-Dong Kim
User info
Collections
NameDescriptionUpdated at
11-12 / 12 show all
LitCoin-Test2021-12-23
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Projects
NameTDescription# Ann. Updated atStatus
1-10 / 160 show all
pubmed-enju-pasAnnotating PubMed abstracts for predicate-argument structure (PAS). Enju 2.4.2 is used to automatically compute PAS.19.1 M2023-11-24Developing
CORD-19-Sentences13.4 M2023-11-24Testing
MyTest9.81 M2023-11-24Testing
sentencesSentence segmentation annotation. Automatic annotation by TextSentencer.6.96 M2023-11-24Developing
CORD-19-PD-MONDOPubDictionaries annotation for MONDO terms - updated at 2020-04-30 It is disease term annotation based on MONDO. Version 2020-04-20. The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.6.32 M2023-11-27Released
LitCovid-PubTator5.88 M2023-11-24Beta
LitCovid-sentences5.63 M2023-11-24Developing
CORD-19_Custom_license_subsetThe Custom license subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.5.08 M2023-11-24Released
LitCovid-PD-CLO3.73 M2023-11-24Developing
DisGeNETDisease-Gene association annotation.3.12 M2023-11-24Beta
Automatic annotators
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.