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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-09-19
Projects
NameTDescription# Ann.Updated atStatus
1-10 / 163 show all
BioASQ-samplecollection of PubMed articles which appear in the BioASQ sample data set.02023-11-28Testing
CHEMDNER-training-testThe training subset of the CHEMDNER corpus29.4 K2023-11-27Testing
pubtator-sampleSample annotation of PubTator produced by Zhiyong Lu et al.282023-11-27Testing
LitCovid-sample-PD-MAT2512023-11-29Developing
GlycoBiology-FMAFMA ontology-based annotation to GlycoBiology abstracts96.3 K2023-11-29Testing
metamap-sampleSample annotation of MetaMep, produced by Aronson, et al. An overview of MetaMap: historical perspective and recent advances, JAMIA 201010.9 K2023-11-27Testing
uniprot-mouseProtein annotation based on UniProt11.5 K2023-11-28Developing
LitCovid-sample-Glycan3.21 K2023-11-29Testing
LitCoin-training-merged14.8 K2023-11-24
EDAM-topicsannotation for EDAM topics11.6 K2023-11-29Testing
Automatic annotators
NameDescription
31-38 / 38 show all
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
PubTatorPubTator annotation provided by NCBI
TextSentencersentence segmentation
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
PubTator-DiseaseTo pull the pre-computed disease annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-MutationTo pull the pre-computed mutation annotation from PubTator.
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.