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NameT Description# Ann.AuthorMaintainerUpdated_atStatus

41-60 / 556 show all
GlycoBiology-GO GO-based annotation to GlycoBiology abstracts0Jin-Dong Kim2023-11-29Testing
SPECIES800_autotagged This project comprises the SPECIES800 corpus documents automatically annotated by the Jensenlab tagger. Annotated entity types are: Genes/proteins from the mentioned organisms (and any human ones) PubChem Compound identifiers NCBI Taxonomy entries Gene Ontology cellular component terms BRENDA Tissue Ontology terms Disease Ontology terms Environment Ontology terms The SPECIES 800 (S800) comprises 800 PubMed abstracts. In its original form species mentions were manually identified and mapped to the corresponding NCBI Taxonomy identifiers. Described in: The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text. Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, et al. (2013). PLoS ONE, 2013, 8(6): e65390. doi:10.1371/journal.pone.0065390. The manually annotated corpus is also available as a PubAnnotation project (see here). 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
example-dialog 0Jin-Dong Kim2023-11-27Testing
LitCovid-PD-HP 922 KJin-Dong Kim2023-11-28Beta
GlycoBiology-PACDB cGGDB-based annotation to GlycoBiology abstracts3.03 KToshihide Shikanaishikanai2023-11-27Testing
LitCoin-GeneOrGeneProduct-v0 https://pubdictionaries.org/text_annotation.json?dictionary=NCBIGene-NER&threshold=0.85&abbreviation=true15.8 KJin-Dong Kim2023-11-29
GlyCosmos600-MAT 863Jin-Dong Kim2023-11-29Testing
GlycoBiology-cGGDB cGGDB-based annotation to GlycoBiology abstracts36Toshihide Shikanaishikanai2023-11-28Testing
pubtator-sample Sample annotation of PubTator produced by Zhiyong Lu et al.28Zhiyong LuJin-Dong Kim2023-11-27Testing
MENA-example 5Jin-Dong Kim2023-11-29
GlycoBiology-FMA FMA ontology-based annotation to GlycoBiology abstracts96.3 KJin-Dong Kim2023-11-29Testing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2023-11-28Testing
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
AGCA_Sue Active Gene Annotation Corpus for the Application in Drug Repurposing Discovery0Jingbo Xia, Xuan Qin, Kaiyin Zhou2023-11-29Developing
pubmed-2016 abstracts published in 20160Jin-Dong Kim2023-11-28
GlycoBiology-Motifs 4.15 KJin-Dong Kim2023-11-29
GlyTouCan-IUPAC 399 Kkiyoko2023-11-29Testing
GlycoGenes annotation for glyco-genes based on GGDB1.01 KJin-Dong Kim2023-11-29Developing
AlvisNLP-Async-Test Test for the asynchronous AlvisNLP/ML annotator family.0Robert Bossyrbossy2023-11-26Testing
JournalClub 170AikoHIRAKI2023-11-29Developing
NameT # Ann.AuthorMaintainerUpdated_atStatus

41-60 / 556 show all
GlycoBiology-GO 0Jin-Dong Kim2023-11-29Testing
SPECIES800_autotagged 0Evangelos Pafilis, Sampo Pyysalo, Lars Juhl Jensenevangelos2015-11-20Testing
example-dialog 0Jin-Dong Kim2023-11-27Testing
LitCovid-PD-HP 922 KJin-Dong Kim2023-11-28Beta
GlycoBiology-PACDB 3.03 KToshihide Shikanaishikanai2023-11-27Testing
LitCoin-GeneOrGeneProduct-v0 15.8 KJin-Dong Kim2023-11-29
GlyCosmos600-MAT 863Jin-Dong Kim2023-11-29Testing
GlycoBiology-cGGDB 36Toshihide Shikanaishikanai2023-11-28Testing
pubtator-sample 28Zhiyong LuJin-Dong Kim2023-11-27Testing
MENA-example 5Jin-Dong Kim2023-11-29
GlycoBiology-FMA 96.3 KJin-Dong Kim2023-11-29Testing
BioASQ-sample 0BioASQJin-Dong Kim2023-11-28Testing
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
AGCA_Sue 0Jingbo Xia, Xuan Qin, Kaiyin Zhou2023-11-29Developing
pubmed-2016 0Jin-Dong Kim2023-11-28
GlycoBiology-Motifs 4.15 KJin-Dong Kim2023-11-29
GlyTouCan-IUPAC 399 Kkiyoko2023-11-29Testing
GlycoGenes 1.01 KJin-Dong Kim2023-11-29Developing
AlvisNLP-Async-Test 0Robert Bossyrbossy2023-11-26Testing
JournalClub 170AikoHIRAKI2023-11-29Developing