| PMA_Manual | | Manually annotated examples of medical device PMA approval statements | 204 | Stefano Rensi | therightstef | 2023-11-27 | Developing | |
| med-device | | | 434 | | laurenc | 2023-11-27 | Developing | |
| blah6 | | device Annotator | 374 | | slee7268 | 2023-11-28 | Testing | |
| tf-test | | | 0 | | Takatomo Fujisawa | 2015-11-20 | Testing | |
| Bioinformatics_fulltext | | | 0 | | Sophie Nam | 2023-11-28 | Uploading | |
| test10 | | | 212 | | Jin-Dong Kim | 2023-11-24 | | |
| test2 | | | 12.3 K | | ykyao | 2023-11-29 | | |
| bionlp-st-ge-2016-coref | | Coreference annotation to the benchmark data set (reference and test) of BioNLP-ST 2016 GE task.
For detailed information, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test). | 853 | DBCLS | Jin-Dong Kim | 2023-11-28 | Released | |
| Genomics_Inform | | | 0 | | Sophie Nam | 2023-11-29 | | |
| Nucleic_Acids | | | 0 | | Sophie Nam | 2023-11-29 | | |
| Briefings | | | 0 | | Sophie Nam | 2023-11-29 | | |
| bionlp-st-2016-SeeDev-training | | Entities and event annotations from the training set of the BioNLP-ST 2016 SeeDev task.
SeeDev task focuses on seed storage and reserve accumulation on the model organism, Arabidopsis thaliana. The SeeDev task is based on the knowledge model Gene Regulation Network for Arabidopsis (GRNA) that meets the needs of text-mining (i.e. manual annotation of texts and automatic information extraction), experimental data indexing and retrieval and reuse in other plant systems. It is also expected to meet the requirements of the integration of the text knowledge with knowledge derived from experimental data in view of modeling in systems biology.
GRNA model defines 16 different types of entities, and 22 types of event (in five sets of event types) that may be combined in complex events.
For more information, please refer to the task website
All annotations :
Train set
Development set
Test set (without events)
| 35 | | EstelleChaix | 2023-11-28 | Released | |
| GoldHamster | | | 285 K | | zebet | 2023-11-29 | Beta | |
| 0_colil | | | 781 K | | Yue Wang | 2023-11-24 | | |
| glycosmos_glycans | | | 0 | | kiyoko | 2023-11-29 | | |
| tmVarCorpus | | Wei C-H, Harris BR, Kao H-Y, Lu Z (2013) tmVar: A text mining approach for extracting sequence variants in biomedical literature, Bioinformatics, 29(11) 1433-1439, doi:10.1093/bioinformatics/btt156. | 1.43 K | Chih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong Lu | Chih-Hsuan Wei | 2023-11-24 | Released | |
| test-2 | | | 0 | | therightstef | 2023-11-29 | Testing | |
| PMA_MER | | PMAs annotated using MERpy. | 58.9 K | Stefano Rensi | therightstef | 2023-11-29 | Developing | |
| uniprot-human | | Uniprot proteins for human | 21.8 K | Jin-Dong Kim | Jin-Dong Kim | 2023-11-29 | Testing | |
| guideline annotations | | 5 guideline annotations with custom vocab | 0 | | Tiffany Leung | 2015-11-07 | Developing | |
