| 0mytest | | | 144 | | Yue Wang | 2023-11-29 | | |
| LitCovid_AGAC | | | 904 | | xiajingbo | 2023-11-29 | | |
| ggdb-test | | | 2.4 K | | Jin-Dong Kim | 2023-11-29 | Testing | |
| CORD-19-PD-HP | | PubDictionaries annotation for HP terms - updated at 2020-04-30
Disease term annotation based on HP.
Version 2020-04-20.
The terms in HP are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here.
Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved. | 1.15 M | | Jin-Dong Kim | 2023-11-29 | Released | |
| GlycoBiology-Motifs | | | 4.15 K | | Jin-Dong Kim | 2023-11-29 | | |
| LitCovid-sample-HP | | | 0 | | Jin-Dong Kim | 2023-11-29 | Testing | |
| excludesZoonoses | | | 25 | | AikoHIRAKI | 2023-11-29 | Developing | |
| LitCoin-Chemical-MeSH-CHEBI | | ChemicalEntity:
Annotated by PD-MeSH2022_CHEBI_tuned-B | 3.84 K | | yucca | 2023-11-29 | Testing | |
| bionlp-st-ge-2016-uniprot | | UniProt protein annotation to the benchmark data set of BioNLP-ST 2016 GE task: reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test).
The annotations are produced based on a dictionary which is semi-automatically compiled for the 34 full paper articles included in the benchmark data set (20 in the reference data set + 14 in the test data set).
For detailed information about BioNLP-ST GE 2016 task data sets, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test).
| 16.2 K | DBCLS | Jin-Dong Kim | 2023-11-29 | Beta | |
| PT_NER_NEL | | Annotations in Portuguese COVID-19 related abstracts from MeSH terminology | 245 | LASIGE-DeST | pruas_18 | 2023-11-29 | Developing | |
| test_HZAU_BioNLP | | | 274 | | AikoHIRAKI | 2023-11-29 | Testing | |
| spacy-test | | Random set of articles used for testing in the development of the RESTful spaCy parsing web service. Since development is now finished, they are released for the community to use. | 131 K | Nico Colic | Nico Colic | 2023-11-29 | Released | |
| sonoma2 | | sonoma2 | 9.09 K | Standigm | chanung | 2023-11-29 | Beta | |
| GlycoBiology-GDGDB | | GDGDB-based annotation to GlycoBiology abstracts | 2.46 K | Toshihide Shikanai | shikanai | 2023-11-29 | Testing | |
| LitCovid-PD-FMA-UBERON | | | 1.3 M | | Jin-Dong Kim | 2023-11-28 | Developing | |
| funRiceGenes-exact | | | 841 | | Yue Wang | 2023-11-28 | Developing | |
| uniprot-mouse | | Protein annotation based on UniProt | 11.5 K | | Jin-Dong Kim | 2023-11-28 | Developing | |
| LitCovid-sample-Pubtator | | | 3.86 K | | Jin-Dong Kim | 2023-11-28 | Uploading | |
| pubmed-2016 | | abstracts published in 2016 | 0 | | Jin-Dong Kim | 2023-11-28 | | |
| glycosmos-test-glycan-structure | | | 448 | | ISSAKU YAMADA | 2023-11-28 | Testing | |
