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NameTDescription# Ann. AuthorMaintainerUpdated_atStatus

301-316 / 316 show all
genia-medco-coref Coreference annotation made to the Genia corpus, following the MUC annotation scheme. It is a product of the collaboration between the Genia and the MedCo projects.45.9 KMedCo project & Genia projectJin-Dong Kim2023-11-24Developing
jnlpba-st-training The training data used in the task came from the GENIA version 3.02 corpus, This was formed from a controlled search on MEDLINE using the MeSH terms "human", "blood cells" and "transcription factors". From this search, 1,999 abstracts were selected and hand annotated according to a small taxonomy of 48 classes based on a chemical classification. Among the classes, 36 terminal classes were used to annotate the GENIA corpus. For the shared task only the classes protein, DNA, RNA, cell line and cell type were used. The first three incorporate several subclasses from the original taxonomy while the last two are interesting in order to make the task realistic for post-processing by a potential template filling application. The publication year of the training set ranges over 1990~1999.51.1 KGENIAYue Wang2023-11-26Released
PMA_MER PMAs annotated using MERpy.58.9 KStefano Rensitherightstef2023-11-29Developing
craft-ca-core-dev Development data for CRAFT CA shared task, core concepts only. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core" set. See the task description for details, but this set contains only annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation. (That is to say, it does not contain any annotations to extension classes).59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
GENIAcorpus multi_cell (1,782) mono_cell (222) virus (2,136) protein_family_or_group (8,002) protein_complex (2,394) protein_molecule (21,290) protein_subunit (942) protein_substructure (129) protein_domain_or_region (1,044) protein_other (97) peptide (521) amino_acid_monomer (784) DNA_family_or_group (332) DNA_molecule (664) DNA_substructure (2) DNA_domain_or_region (39) DNA_other (16) RNA_family_or_group (1,545) RNA_molecule (554) RNA_substructure (106) RNA_domain_or_region (8,237) RNA_other (48) polynucleotide (259) nucleotide (243) lipid (2,375) carbohydrate (99) other_organic_compound (4,113) body_part (461) tissue (706) cell_type (7,473) cell_component (679) cell_line (4,129) other_artificial_source (211) inorganic (258) atom (342) other (21,056) 78.9 KGENIA ProjectYue Wang2023-11-29Released
craft-ca-core-ex-dev Development data for CRAFT CA shared task, core concepts + EXTENSIONS. This project contains the development (training) annotations for the Concept Annotation task of the CRAFT Shared Task 2019. This particular set of concept annotations is the "core+extensions" set. See the task description for details, but this set contains annotations to concepts that appear in the original 10 Open Biomedical Ontologies used for annotation PLUS annotations to extension classes created using the core concepts.90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
c_corpus Documents included in the c_corpus: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv107 K2023-11-29Released
PubMed_Structured_Abstracts Sections (zones) as retrieved from PubMed.131 Kzebet2023-11-28Released
OryzaGP_2021_v2 OryzaGP_2021_v2 will use a second annotator 208 Klarmande2023-11-29Developing
GoldHamster 285 Kzebet2023-11-29Beta
21k_plant_trait_mention 333 Kxzyao2023-11-29Testing
Oryza-OGER 462 Kfabiorinaldi2023-11-29
LitCovid-PD-UBERON 540 KJin-Dong Kim2023-11-29
pqqtest_sentence 565 Kyaoxinzhi2023-11-29Testing
0_colil 781 KYue Wang2023-11-24
LitCovid-PD-MONDO 2.26 MJin-Dong Kim2023-11-24
NameT# Ann. AuthorMaintainerUpdated_atStatus

301-316 / 316 show all
genia-medco-coref 45.9 KMedCo project & Genia projectJin-Dong Kim2023-11-24Developing
jnlpba-st-training 51.1 KGENIAYue Wang2023-11-26Released
PMA_MER 58.9 KStefano Rensitherightstef2023-11-29Developing
craft-ca-core-dev 59.8 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
GENIAcorpus 78.9 KGENIA ProjectYue Wang2023-11-29Released
craft-ca-core-ex-dev 90.2 KUniversity of Colorado Anschutz Medical Campuscraft-st2023-11-29Released
c_corpus 107 K2023-11-29Released
PubMed_Structured_Abstracts 131 Kzebet2023-11-28Released
OryzaGP_2021_v2 208 Klarmande2023-11-29Developing
GoldHamster 285 Kzebet2023-11-29Beta
21k_plant_trait_mention 333 Kxzyao2023-11-29Testing
Oryza-OGER 462 Kfabiorinaldi2023-11-29
LitCovid-PD-UBERON 540 KJin-Dong Kim2023-11-29
pqqtest_sentence 565 Kyaoxinzhi2023-11-29Testing
0_colil 781 KYue Wang2023-11-24
LitCovid-PD-MONDO 2.26 MJin-Dong Kim2023-11-24