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NameTDescription# Ann.Author MaintainerUpdated_atStatus

441-460 / 592 show all
LitCovid-PD-HP-v1 PubDictionaries annotation for human phenotype terms - updated at 2020-04-20 Disease term annotation based on HP. Version 2020-04-20. The terms in HP are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.3.03 KJin-Dong Kim2023-11-29Released
Glycan-Motif 11.1 KISSAKU YAMADA2023-11-29Testing
EwhaLecture2020 testing02023-11-29Testing
NBConcepts 0raywang2023-11-29
KoreanFN-example Korean FrameNet example6Jin-Dong Kim2023-11-29Developing
Find2ER Find the Findings of Enzymatic Reaction0Akihiro KamedaAkihiro Kameda2023-11-26Testing
metamap-sample Sample annotation of MetaMep, produced by Aronson, et al. An overview of MetaMap: historical perspective and recent advances, JAMIA 201010.9 KAlan R AronsonJin-Dong Kim2023-11-27Testing
relna https://www.tagtog.net/jmcejuela/relna2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
QFMC_MEDLINE Quaero French Medical Corpus: Annotation of MEDLINE titles5.9 KAurélie NévéolPierre Zweigenbaum2023-11-29Beta
SNPPhenoExt 3behrouz bokharaeianbokharaeian2023-11-29Developing
BioASQ-sample collection of PubMed articles which appear in the BioASQ sample data set.0BioASQJin-Dong Kim2023-11-28Testing
FSU-PRGE A new broad-coverage corpus composed of 3,306 MEDLINE abstracts dealing with gene and protein mentions. The annotation process was semi-automatic. Publication: http://aclweb.org/anthology/W/W10/W10-1838.pdf59.5 KCALBC ProjectYue Wang2023-11-26Released
SCAI-Test A small corpus for the evaluation of dictionaries containing chemical entities. Publication: http://www.scai.fraunhofer.de/fileadmin/images/bio/data_mining/paper/kolarik2008.pdf Original source: https://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads/corpora-for-chemical-entity-recognition.html1.21 KCALBC ProjectYue Wang2023-11-28Released
PathNERGold Gold standard used for training PathNER0Chengkin Wunikolamilosevic2023-11-29Developing
tmVarCorpus Wei C-H, Harris BR, Kao H-Y, Lu Z (2013) tmVar: A text mining approach for extracting sequence variants in biomedical literature, Bioinformatics, 29(11) 1433-1439, doi:10.1093/bioinformatics/btt156.1.43 KChih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong LuChih-Hsuan Wei2023-11-24Released
WikiPainGoldStandard Wiki-pain contains molecular interactions that are relevant to pain.878Daniel Jamiesonnikolamilosevic2023-11-28Developing
新着論文レビュー 新着論文レビューに関するアノテーション。0Database Center for Life ScienceYasunori Yamamoto2019-02-04Developing
Allie An annotation set of abbreviations and expanded forms extracted from PubMed/MEDLINE by machines.8.7 MDatabase Center for Life ScienceYasunori Yamamoto2023-11-24Developing
bionlp-st-ge-2016-reference It is the benchmark reference data set of the BioNLP-ST 2016 GE task. It includes Genia-style event annotations to 20 full paper articles which are about NFκB proteins. The task is to develop an automatic annotation system which can produce annotation similar to the annotation in this data set as much as possible. For evaluation of the performance of a participating system, the system needs to produce annotations to the documents in the benchmark test data set (bionlp-st-ge-2016-test). GE 2016 benchmark data set is provided as multi-layer annotations which include: bionlp-st-ge-2016-reference: benchmark reference data set (this project) bionlp-st-ge-2016-test: benchmark test data set (annotations are blined) bionlp-st-ge-2016-test-proteins: protein annotation to the benchmark test data set Following is supporting resources: bionlp-st-ge-2016-coref: coreference annotation bionlp-st-ge-2016-uniprot: Protein annotation with UniProt IDs. pmc-enju-pas: dependency parsing result produced by Enju UBERON-AE: annotation for anatomical entities as defined in UBERON ICD10: annotation for disease names as defined in ICD10 GO-BP: annotation for biological process names as defined in GO GO-CC: annotation for cellular component names as defined in GO A SPARQL-driven search interface is provided at http://bionlp.dbcls.jp/sparql.14.4 KDBCLSJin-Dong Kim2023-11-29Released
UBERON-AE Annotation for anatomical entities based on the "Anatomical Entity" subtree of UBERON ontology. Annotations are automatically produced using PubDictionaries with threshold: 0.85.859 KDBCLSJin-Dong Kim2023-11-29Developing
NameT# Ann.Author MaintainerUpdated_atStatus

441-460 / 592 show all
LitCovid-PD-HP-v1 3.03 KJin-Dong Kim2023-11-29Released
Glycan-Motif 11.1 KISSAKU YAMADA2023-11-29Testing
EwhaLecture2020 02023-11-29Testing
NBConcepts 0raywang2023-11-29
KoreanFN-example 6Jin-Dong Kim2023-11-29Developing
Find2ER 0Akihiro KamedaAkihiro Kameda2023-11-26Testing
metamap-sample 10.9 KAlan R AronsonJin-Dong Kim2023-11-27Testing
relna 2.77 KAshish Baghudana and Juan Miguel Cejuelatagtog2023-11-29Developing
QFMC_MEDLINE 5.9 KAurélie NévéolPierre Zweigenbaum2023-11-29Beta
SNPPhenoExt 3behrouz bokharaeianbokharaeian2023-11-29Developing
BioASQ-sample 0BioASQJin-Dong Kim2023-11-28Testing
FSU-PRGE 59.5 KCALBC ProjectYue Wang2023-11-26Released
SCAI-Test 1.21 KCALBC ProjectYue Wang2023-11-28Released
PathNERGold 0Chengkin Wunikolamilosevic2023-11-29Developing
tmVarCorpus 1.43 KChih-Hsuan Wei , Bethany R. Harris , Hung-Yu Kao and Zhiyong LuChih-Hsuan Wei2023-11-24Released
WikiPainGoldStandard 878Daniel Jamiesonnikolamilosevic2023-11-28Developing
新着論文レビュー 0Database Center for Life ScienceYasunori Yamamoto2019-02-04Developing
Allie 8.7 MDatabase Center for Life ScienceYasunori Yamamoto2023-11-24Developing
bionlp-st-ge-2016-reference 14.4 KDBCLSJin-Dong Kim2023-11-29Released
UBERON-AE 859 KDBCLSJin-Dong Kim2023-11-29Developing