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NameTDescription# Ann.AuthorMaintainer Updated_atStatus

521-540 / 557 show all
DisGeNET5_gene_disease The file contains gene-disease associations obtained by text mining MEDLINE abstracts using the BeFree system including the gene and disease off sets.2.04 MIBI GroupYue Wang2023-11-24Released
FSU-PRGE A new broad-coverage corpus composed of 3,306 MEDLINE abstracts dealing with gene and protein mentions. The annotation process was semi-automatic. Publication: http://aclweb.org/anthology/W/W10/W10-1838.pdf59.5 KCALBC ProjectYue Wang2023-11-26Released
funRiceGenes-exact 841Yue Wang2023-11-28Developing
bionlp-st-pc-2013-training The training dataset from the pathway curation (PC) task in the BioNLP Shared Task 2013. The entity types defined in the PC task are simple chemical, gene or gene product, complex and cellular component.7.86 KNaCTeM and KISTIYue Wang2023-11-27Released
0_colil 781 KYue Wang2023-11-24
jnlpba-st-training The training data used in the task came from the GENIA version 3.02 corpus, This was formed from a controlled search on MEDLINE using the MeSH terms "human", "blood cells" and "transcription factors". From this search, 1,999 abstracts were selected and hand annotated according to a small taxonomy of 48 classes based on a chemical classification. Among the classes, 36 terminal classes were used to annotate the GENIA corpus. For the shared task only the classes protein, DNA, RNA, cell line and cell type were used. The first three incorporate several subclasses from the original taxonomy while the last two are interesting in order to make the task realistic for post-processing by a potential template filling application. The publication year of the training set ranges over 1990~1999.51.1 KGENIAYue Wang2023-11-26Released
PIR-corpus2 The protein tag was used to tag proteins, or protein-associated or -related objects, such as domains, pathways, expression of gene. Annotation guideline: http://pir.georgetown.edu/pirwww/about/doc/manietal.pdf5.52 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-29Released
0mytest 144Yue Wang2023-11-29
SCAI-Test A small corpus for the evaluation of dictionaries containing chemical entities. Publication: http://www.scai.fraunhofer.de/fileadmin/images/bio/data_mining/paper/kolarik2008.pdf Original source: https://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads/corpora-for-chemical-entity-recognition.html1.21 KCALBC ProjectYue Wang2023-11-28Released
bionlp-st-id-2011-training The training dataset from the infectious diseases (ID) task in the BioNLP Shared Task 2011. Entity types: - Genes and gene products: gene, RNA, and protein name mentions. - Two-component systems: mentions of the names of two-component regulatory systems, frequently embedding the names of the two Proteins forming the system.- Chemicals: mentions of chemical compounds such as "NaCL".- Organisms: mentions of organism names or organism specification through specific properties (e.g. "graRS mutant").- Regulons/Operons: mentions of names of specific regulons and operons.5.61 KUniversity of Tokyo Tsujii Laboratory, NaCTeM and Biocomplexity Institute of Virginia TechYue Wang2023-11-28Released
OryzaGP A dataset for Named Entity Recognition for rice gene29.1 KHuy Do and Pierre LarmandeYue Wang2023-11-24Uploading
DisGeNET5_variant_disease The file contains variant-disease associations obtained by text mining MEDLINE abstracts using the BeFree system, including the variant and disease off sets. 144 KIBI GroupYue Wang2023-11-24Released
Goldhamster2_CellLineAnn 618zebet2023-11-29Developing
UseCases_ArguminSci_Discourse Predictions from ArguminSci(http://lelystad.informatik.uni-mannheim.de/) for the seven datasets and for discourse categories7.12 Kzebet2023-11-29Developing
LitCovid-ArguminSci Discourse elements for the documents in the LitCovid dataset. Annotations were automatically predicted by the ArguminSci tool (https://github.com/anlausch/ArguminSci)4.9 Kzebet2023-11-27Released
SMAFIRA-Case-Studies-16850029 From: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv0zebet2023-11-30Developing
PubMed_ArguminSci Predictions for PubMed automatically extracted with the ArguminSci tool (https://github.com/anlausch/ArguminSci).777 Kzebet2023-11-24Released
c_corpus Documents included in the c_corpus: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv107 K2023-11-29Released
SMAFIRA-Case-Studies-19735549 From: https://github.com/SMAFIRA/c_corpus/blob/master/SMAFIRAc_0.4_Annotations.csv0zebet2023-11-30Developing
GoldHamster 285 Kzebet2023-11-29Beta
NameT# Ann.AuthorMaintainer Updated_atStatus

521-540 / 557 show all
DisGeNET5_gene_disease 2.04 MIBI GroupYue Wang2023-11-24Released
FSU-PRGE 59.5 KCALBC ProjectYue Wang2023-11-26Released
funRiceGenes-exact 841Yue Wang2023-11-28Developing
bionlp-st-pc-2013-training 7.86 KNaCTeM and KISTIYue Wang2023-11-27Released
0_colil 781 KYue Wang2023-11-24
jnlpba-st-training 51.1 KGENIAYue Wang2023-11-26Released
PIR-corpus2 5.52 KUniversity of Delaware and Georgetown University Medical CenterYue Wang2023-11-29Released
0mytest 144Yue Wang2023-11-29
SCAI-Test 1.21 KCALBC ProjectYue Wang2023-11-28Released
bionlp-st-id-2011-training 5.61 KUniversity of Tokyo Tsujii Laboratory, NaCTeM and Biocomplexity Institute of Virginia TechYue Wang2023-11-28Released
OryzaGP 29.1 KHuy Do and Pierre LarmandeYue Wang2023-11-24Uploading
DisGeNET5_variant_disease 144 KIBI GroupYue Wang2023-11-24Released
Goldhamster2_CellLineAnn 618zebet2023-11-29Developing
UseCases_ArguminSci_Discourse 7.12 Kzebet2023-11-29Developing
LitCovid-ArguminSci 4.9 Kzebet2023-11-27Released
SMAFIRA-Case-Studies-16850029 0zebet2023-11-30Developing
PubMed_ArguminSci 777 Kzebet2023-11-24Released
c_corpus 107 K2023-11-29Released
SMAFIRA-Case-Studies-19735549 0zebet2023-11-30Developing
GoldHamster 285 Kzebet2023-11-29Beta