| bionlp-st-cg-2013-training | | The training dataset from the cancer genetics task in the BioNLP Shared Task 2013.
Composed of anatomical and molecular entities. | 10.9 K | 2023-11-28 | Released | |
| SCAI-Test | | A small corpus for the evaluation of dictionaries containing chemical entities.
Publication: http://www.scai.fraunhofer.de/fileadmin/images/bio/data_mining/paper/kolarik2008.pdf
Original source: https://www.scai.fraunhofer.de/en/business-research-areas/bioinformatics/downloads/corpora-for-chemical-entity-recognition.html | 1.21 K | 2023-11-28 | Released | |
| PIR-corpus1 | | The Protein Information Resource (PIR) is not biased towards any particular biomedical domain, and is expected to provide more diverse protein names in a given sample size.
Annotation category: protein, compound-protein, acronym. | 4.44 K | 2023-11-27 | Released | |
| AIMed | | The AIMed corpus is one of the most widely used corpora for protein-protein interaction extraction. The protein annotations are either parts of the protein interaction annotations, or are uninvolved in any protein interaction annotation.
Publication: http://www.cs.utexas.edu/~ml/papers/bionlp-aimed-04.pdf | 4.04 K | 2023-11-27 | Testing | |
| bionlp-st-pc-2013-training | | The training dataset from the pathway curation (PC) task in the BioNLP Shared Task 2013.
The entity types defined in the PC task are simple chemical, gene or gene product, complex and cellular component. | 7.86 K | 2023-11-27 | Released | |
| FSU-PRGE | | A new broad-coverage corpus composed of 3,306 MEDLINE abstracts dealing with gene and protein mentions.
The annotation process was semi-automatic.
Publication: http://aclweb.org/anthology/W/W10/W10-1838.pdf | 59.5 K | 2023-11-26 | Released | |
| PennBioIE | | The PennBioIE corpus (0.9) covers two domains of biomedical knowledge. One is the inhibition of the cytochrome P450 family of enzymes (CYP450 or CYP for short) , and the other domain is the molecular genetics of dance (oncology or onco for short). | 23.8 K | 2023-11-26 | Released | |
| CyanoBase | | Cyanobacteria are prokaryotic organisms that have served as important model organisms for studying oxygenic photosynthesis and have played a significant role in the Earthfs history as primary producers of atmospheric oxygen.
Publication: http://www.aclweb.org/anthology/W12-2430 | 1.1 K | 2023-11-26 | Released | |
| jnlpba-st-training | | The training data used in the task came from the GENIA version 3.02 corpus, This was formed from a controlled search on MEDLINE using the MeSH terms "human", "blood cells" and "transcription factors". From this search, 1,999 abstracts were selected and hand annotated according to a small taxonomy of 48 classes based on a chemical classification. Among the classes, 36 terminal classes were used to annotate the GENIA corpus. For the shared task only the classes protein, DNA, RNA, cell line and cell type were used. The first three incorporate several subclasses from the original taxonomy while the last two are interesting in order to make the task realistic for post-processing by a potential template filling application. The publication year of the training set ranges over 1990~1999. | 51.1 K | 2023-11-26 | Released | |
| OryzaGP | | A dataset for Named Entity Recognition for rice gene | 29.1 K | 2023-11-24 | Uploading | |
