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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-13 / 13 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Lectin-Jamboree2024-12-19
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-12-19
Projects
NameTDescription# Ann.Updated atStatus
91-100 / 175 show all
LitCovid-sample-PD-GlycoEpitope12023-11-27Developing
LitCovid-sample-PD-GO-BP-07082023-11-29Beta
LitCovid-GlycoBiologyArticles from GlycoBiology, received by the keyword "Covid-19"02023-11-29Testing
LitCovid-sentences-v1Sentence segmentation of all the texts in the LitCovid literature. The segmentation is automatically obtained using the TextSentencer annotation service developed and maintained by DBCLS.16.5 K2023-11-27Released
CORD-19-sample-UBERON542023-11-26Developing
LitCovid-sample-PD-NCBITaxon1.35 K2023-11-29Beta
GlyCosmos6-docs02023-11-29Developing
Test-GeneOrGeneProduct1.17 K2023-11-29
CORD-19-sample-FMA-UBERON612023-11-29Developing
LitCovid-sample-Enju13.1 K2023-11-29Developing
Automatic annotators
NameDescription
1-10 / 40 show all
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.
PubTator-DiseaseTo pull the pre-computed disease annotation from PubTator.
PubTator-MutationTo pull the pre-computed mutation annotation from PubTator.
discourse-simplifierA discourse analyzer developed by Univ. Manchester.
PD-NGLY1-deficiency-BA batch annotator for NGLY1 deficiency
PD-UBERON-AEIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
PD-FMA-PAEPhysical Anatomical Entities from FMA
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.