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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-13 / 13 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Lectin-Jamboree2024-12-19
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-12-19
Projects
NameTDescription# Ann. Updated atStatus
1-10 / 175 show all
PubMed-2000abstracts published in 2000.02023-11-29Developing
GlyCosmos-GlycanStructure-c02023-11-29Testing
GlyCosmos600-docsA random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.02023-11-29Released
test_disfluency_annotation_auto_jp02023-12-28Testing
pubmed-2016abstracts published in 201602023-11-28
example-dialog02023-11-27Testing
BioASQ-samplecollection of PubMed articles which appear in the BioASQ sample data set.02023-11-28Testing
GlycoConjugate-collectionThe PubMed entries (titles and abstracts) from the journal of GlycoConjugate02023-11-28Developing
GlycoBiology-GOGO-based annotation to GlycoBiology abstracts02023-11-29Testing
PubCasesCollectionabstracts in PubCases02023-11-29
Automatic annotators
NameDescription
1-10 / 40 show all
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.
PubTator-DiseaseTo pull the pre-computed disease annotation from PubTator.
PubTator-MutationTo pull the pre-computed mutation annotation from PubTator.
discourse-simplifierA discourse analyzer developed by Univ. Manchester.
PD-NGLY1-deficiency-BA batch annotator for NGLY1 deficiency
PD-UBERON-AEIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
PD-FMA-PAEPhysical Anatomical Entities from FMA
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.