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Jin-Dong Kim
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Name DescriptionUpdated at
11-11 / 11 show all
bionlp-st-ge-2016The 2016 edition of the Genia event extraction (GE) task organized within BioNLP-ST 20162019-03-11
Projects
NameTDescription# Ann.Updated atStatus
11-20 / 158 show all
Test-GeneOrGeneProduct1.17 K2023-11-29
LitCovid-PD-UBERON540 K2023-11-29
GlyCosmos600-FMA7.12 K2023-11-29
Test-Documents12023-11-24
pubmed-2016abstracts published in 201602023-11-28
GlycoBiology-Motifs4.15 K2023-11-29
LitCoin-GeneOrGeneProduct-v0https://pubdictionaries.org/text_annotation.json?dictionary=NCBIGene-NER&threshold=0.85&abbreviation=true15.8 K2023-11-29
LitCoin-training-merged14.8 K2023-11-24
semrep-sampleSample annotation of SemRep, produced by Rindflesch, et al. Rindflesch, T.C. and Fiszman, M. (2003). The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. Journal of Biomedical Informatics, 36(6):462-477.11.1 K2023-11-29Testing
DocumentLevelAnnotationSampleA sample project for document level annotation472023-11-29Testing
Automatic annotators
NameDescription
1-10 / 40 show all
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.
TextSentencersentence segmentation
PubTator-DiseaseTo pull the pre-computed disease annotation from PubTator.
PubTator-MutationTo pull the pre-computed mutation annotation from PubTator.
discourse-simplifierA discourse analyzer developed by Univ. Manchester.
PD-NGLY1-deficiency-BA batch annotator for NGLY1 deficiency
PD-UBERON-AEIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.