| bionlp-st-ge-2016 | | The 2016 edition of the Genia event extraction (GE) task organized within BioNLP-ST 2016 | 2019-03-11 | |
| CORD-19 | | CORD-19 (COVID-19 Open Research Dataset) is a free, open resource for the global research community provided by the Allen Institute for AI: https://pages.semanticscholar.org/coronavirus-research.
As of 2020-03-20, it contains over 29,000 full text articles. This CORD-19 collection at PubAnnotation is prepared for the purpose of collecting annotations to the texts, so that they can be easily accessed and utilized.
If you want to contribute with your annotation,
take the documents in the
CORD-19_All_docs project,
produce your annotation to the texts using your annotation system, and
contribute the annotation back to PubAnnotation (HowTo).
All the contributed annotations will become publicly available.
Please note that, during uploading your annotation data, you do not need to be worried about slight changes in the text: PubAnnotation will automatically catch them and adjust the positions appropriately.
Once you have uploaded your annotation, please notify it to admin@pubannotation.org
admin@pubannotation.org, so that it can be included in this collection, which will make your annotation much easily findable.
Note that as the CORD-19 dataset grows, the documents in this collection also will be updated.
IMPORTANT: CORD-19 License agreement requires that the dataset must be used for text and data mining only. | 2020-04-14 | |
| CORD-19-sample-annotation | | | 2020-04-21 | |
| GlycoBiology | | Annotations made to the titles and abstracts of the journal 'GlycoBiology' | 2019-03-10 | |
| GlyCosmos15 | | Collection of annotations to the abstracts from the following journals:
Analytical_Chemistry
Biochim_Biophys_Acta
Carbohydrate_Research
Cell
Glycobiology
Glycoconjugate_Journal
J_Am_Chem_Soc
Journal_of_Biological_Chemistry
Journal_of_Proteome_Research
Journal_of_Proteomics
Molecular_and_Cellular_Proteomics
Nature_Biotechnology
Nature_Communications
Nature_Methods
Scientific_Reports
| 2024-09-19 | |
| Glycosmos6 | | This collection contains annotation projects
which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals:
Glycobiology
Glycoconjugate journal
The Journal of biological chemistry
Journal of proteome research
Journal of proteomics
Carbohydrate research
| 2023-11-16 | |
| GlyCosmos600 | | A random collection of 600 PubMed abstracts from 6 glycobiology-related journals:
Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research,
Journal of proteomics, and Carbohydrate research.
The whole PMIDs were collected on June 11, 2019.
From each journal, 100 PMIDs were randomly sampled. | 2021-10-22 | |
| LitCoin | | | 2021-12-14 | |
| LitCovid | | | 2021-10-18 | |
| LitCovid-sample | | Various annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations. | 2021-01-14 | |
