| LitCovid-sample | | Various annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations. | 2021-01-14 | |
| Glycosmos6 | | This collection contains annotation projects
which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals:
Glycobiology
Glycoconjugate journal
The Journal of biological chemistry
Journal of proteome research
Journal of proteomics
Carbohydrate research
| 2023-11-16 | |
| bionlp-st-ge-2016 | | The 2016 edition of the Genia event extraction (GE) task organized within BioNLP-ST 2016 | 2019-03-11 | |
| LitCovid-v1 | | This collection includes the result from the Covid-19 Virtual Hackathon.
LitCovid is a comprehensive literature resource on the subject of Covid-19 collected by NCBI:
https://www.ncbi.nlm.nih.gov/research/coronavirus/
Since the literature dataset was released, several groups are producing annotations to the dataset.
To facilitate a venue for aggregating the valuable resources which are highly relevant to each other, and should be much more useful when they can be accessed together, this PubAnnotation collection is set up.
It is a part of the Covid19-PubAnnotation project.
In this collection,
the LitCovid-docs project contains all the documents contained in the LitCovid literature collection, and the other projects are annotation datasets contributed by various groups.
It is an open collection, which means anyone who wants to contribute can do so, in the following way:
take the documents in the,
LitCovid-docs project
produce annotation to the texts based on your resource, and
contribute the annotation back to this collection:
create your own project at PubAnnotaiton,
upload your annotation to the project (HowTo), and
add the project to this collection.
All the contributed annotations will become publicly available.
Please note that, during uploading your annotation data, you do not need to be worried about slight changes in the text: PubAnnotation will automatically catch them and adjust the positions appropriately.
Should you have any question, please feel free to mail to admin@pubannotation.org.
| 2020-11-20 | |
| Preeclampsia | | Preeclampsia-related annotations for text mining | 2019-03-10 | |
| CORD-19 | | CORD-19 (COVID-19 Open Research Dataset) is a free, open resource for the global research community provided by the Allen Institute for AI: https://pages.semanticscholar.org/coronavirus-research.
As of 2020-03-20, it contains over 29,000 full text articles. This CORD-19 collection at PubAnnotation is prepared for the purpose of collecting annotations to the texts, so that they can be easily accessed and utilized.
If you want to contribute with your annotation,
take the documents in the
CORD-19_All_docs project,
produce your annotation to the texts using your annotation system, and
contribute the annotation back to PubAnnotation (HowTo).
All the contributed annotations will become publicly available.
Please note that, during uploading your annotation data, you do not need to be worried about slight changes in the text: PubAnnotation will automatically catch them and adjust the positions appropriately.
Once you have uploaded your annotation, please notify it to admin@pubannotation.org
admin@pubannotation.org, so that it can be included in this collection, which will make your annotation much easily findable.
Note that as the CORD-19 dataset grows, the documents in this collection also will be updated.
IMPORTANT: CORD-19 License agreement requires that the dataset must be used for text and data mining only. | 2020-04-14 | |
| GlyCosmos15 | | Collection of annotations to the abstracts from the following journals:
Analytical_Chemistry
Biochim_Biophys_Acta
Carbohydrate_Research
Cell
Glycobiology
Glycoconjugate_Journal
J_Am_Chem_Soc
Journal_of_Biological_Chemistry
Journal_of_Proteome_Research
Journal_of_Proteomics
Molecular_and_Cellular_Proteomics
Nature_Biotechnology
Nature_Communications
Nature_Methods
Scientific_Reports
| 2024-12-19 | |
| GlyCosmos600 | | A random collection of 600 PubMed abstracts from 6 glycobiology-related journals:
Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research,
Journal of proteomics, and Carbohydrate research.
The whole PMIDs were collected on June 11, 2019.
From each journal, 100 PMIDs were randomly sampled. | 2021-10-22 | |
| GlycoBiology | | Annotations made to the titles and abstracts of the journal 'GlycoBiology' | 2019-03-10 | |
| LitCoin | | | 2021-12-14 | |
