| PubTator-Chemical | To pull the pre-computed chemical annotation from PubTator. | |
| PubTator-Gene | To pull the pre-computed gene annotation from PubTator. | |
| PubTator-Species | To pull the pre-computed Species annotation from PubTator. | |
| TextSentencer | sentence segmentation | |
| PubTator-Disease | To pull the pre-computed disease annotation from PubTator. | |
| PubTator-Mutation | To pull the pre-computed mutation annotation from PubTator. | |
| discourse-simplifier | A discourse analyzer developed by Univ. Manchester. | |
| PD-NGLY1-deficiency-B | A batch annotator for NGLY1 deficiency | |
| PD-UBERON-AE | It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85. | |
| PD-MONDO | PubDictionaries annotation with the MONDO dictionary. | |
