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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-09-19
Projects
NameTDescription# Ann.Updated atStatus
111-120 / 163 show all
GlyCosmos600-GlycanStructure972023-11-29Testing
GlyCosmos600-MAT8632023-11-29Testing
MENA-example232023-11-24Testing
metamap-sampleSample annotation of MetaMep, produced by Aronson, et al. An overview of MetaMap: historical perspective and recent advances, JAMIA 201010.9 K2023-11-27Testing
MyTest9.81 M2023-11-24Testing
LitCovid-sample-UniProt1.25 K2023-11-30Testing
performance-testa project for performance test480 K2023-11-27Testing
GlycoBiology-FMAFMA ontology-based annotation to GlycoBiology abstracts96.3 K2023-11-29Testing
DocumentLevelAnnotationSampleA sample project for document level annotation472023-11-29Testing
GlycoBiology-GOGO-based annotation to GlycoBiology abstracts02023-11-29Testing
Automatic annotators
NameDescription
31-38 / 38 show all
PD-MAT
PD-CLO
PD-NCBITaxon
PD-UBERON-AE-2023It annotates for anatomical entities, based on the UBERON-AE-2023 dictionary on PubDictionaries. Threshold is set to 0.85.
Glycan-Image
Glycan-GlyCosmos
TextSentencersentence segmentation
PD-GlycoEpitope
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.