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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-09-19
Projects
NameTDescription # Ann.Updated atStatus
61-70 / 161 show all
pubmed-enju-pasAnnotating PubMed abstracts for predicate-argument structure (PAS). Enju 2.4.2 is used to automatically compute PAS.19.1 M2023-11-24Developing
Anatomy-UBERONAnatomical structures based on UBERON.2.12 M2024-09-19Developing
Anatomy-MATAnatomical structures based on Minimal Anatomical Terminology (MAT).778 K2024-09-19Developing
GlyCosmos15-docsAnalytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports02024-09-19Released
PubMed-French-testA collection of PubMed abstract written in French02023-11-29Developing
PubMed-German-testA collection of PubMed abstracts which are written in German02023-11-24Developing
NGLY1-deficiencyA collection of PubMed abstracts that may be related to NGLY1 deficiency.60.5 K2023-11-29Developing
PubMed-2017abstracts published in 2017.02023-11-24Developing
pubmed-2016abstracts published in 201602023-11-28
PubMed-2000abstracts published in 2000.02023-11-29Developing
Automatic annotators
NameDescription
31-40 / 40 show all
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
Glycan-Motif-Image
PD-MAT
PD-CLO
PD-NCBITaxon
PD-UBERON-AE-2023It annotates for anatomical entities, based on the UBERON-AE-2023 dictionary on PubDictionaries. Threshold is set to 0.85.
Glycan-Image
Glycan-GlyCosmos
TextSentencersentence segmentation
PD-GlycoEpitope
Editors
Name Description
1-1 / 1
TextAEThe official stable version of TextAE.