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Jin-Dong Kim
User info
Collections
NameDescriptionUpdated at
11-12 / 12 show all
LitCoin-Test2021-12-23
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Projects
NameT Description# Ann.Updated atStatus
121-130 / 160 show all
GlyCosmos600-Glycan-Motif-Structure9192023-11-29Developing
LitCovid-PD-CLO3.73 M2023-11-24Developing
DisGeNETDisease-Gene association annotation.3.12 M2023-11-24Beta
LitCovid-PD-CHEBI1.43 M2023-11-24Developing
LitCovid-PD-FMA-UBERON1.3 M2023-11-28Developing
NGLY1-deficiencyA collection of PubMed abstracts that may be related to NGLY1 deficiency.60.5 K2023-11-29Developing
preeclampsia_genes17.8 K2023-11-29Developing
CHEMDNER-training-testThe training subset of the CHEMDNER corpus29.4 K2023-11-27Testing
GO-MFAnnotation for molecular functions as defined in the "Molecular Function" subtree of Gene Ontology19.7 K2023-12-04Testing
GlyCosmos600-CLO1.73 K2023-11-28Testing
Automatic annotators
NameDescription
31-39 / 39 show all
PD-NCBIGene
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
Glycan-Motif-Image
PD-MAT
PD-CLO
PD-GlycoEpitope
PD-NCBITaxon
PD-UBERON-AE-2023It annotates for anatomical entities, based on the UBERON-AE-2023 dictionary on PubDictionaries. Threshold is set to 0.85.
Glycan-Image
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.