> top > users > Jin-Dong Kim
Jin-Dong Kim
User info
Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann.Updated at Status
31-40 / 160 show all
LitCovid-sample-MedDRA1852023-11-27Testing
LitCoin-entities-OrganismTaxon-PD9492023-11-27Testing
bionlp-st-ge-2016-test-proteinsProtein annotations to the benchmark test data set of the BioNLP-ST 2016 GE task. A participant of the GE task may import the documents and annotations of this project to his/her own project, to begin with producing event annotations. For more details, please refer to the benchmark test data set (bionlp-st-ge-2016-test). 4.34 K2023-11-27Released
metamap-sampleSample annotation of MetaMep, produced by Aronson, et al. An overview of MetaMap: historical perspective and recent advances, JAMIA 201010.9 K2023-11-27Testing
LitCovid-sentences-v1Sentence segmentation of all the texts in the LitCovid literature. The segmentation is automatically obtained using the TextSentencer annotation service developed and maintained by DBCLS.16.5 K2023-11-27Released
LitCovid-sample-PD-GlycoEpitope12023-11-27Developing
GlyCosmos600-GlycoProteinsGlycoProtein annotations were made using the glycoprotein-name dictionary on PubDictionaries: http://pubannotation.org/projects/GlyCosmos600-docs The documents were imported from the GlyCosmos600-docs project: http://pubannotation.org/projects/GlyCosmos600-docs3.68 K2023-11-27Testing
GlyCosmos600-GlycoEpitope2772023-11-27Testing
example-dialog02023-11-27Testing
performance-testa project for performance test480 K2023-11-27Testing
Automatic annotators
NameDescription
31-39 / 39 show all
PD-NCBIGene
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
Glycan-Motif-Image
PD-MAT
PD-CLO
PD-GlycoEpitope
PD-NCBITaxon
PD-UBERON-AE-2023It annotates for anatomical entities, based on the UBERON-AE-2023 dictionary on PubDictionaries. Threshold is set to 0.85.
Glycan-Image
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.