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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameT Description# Ann.Updated atStatus
31-40 / 160 show all
GlyCosmos-GlycanStructure-c02023-11-29Testing
CHEMDNER-training-testThe training subset of the CHEMDNER corpus29.4 K2023-11-27Testing
LitCovid-manual5402023-11-30Developing
GlycoGenesannotation for glyco-genes based on GGDB1.01 K2023-11-29Developing
PubMed-2000abstracts published in 2000.02023-11-29Developing
GlycoBiology-Motifs4.15 K2023-11-29
pubmed-2016abstracts published in 201602023-11-28
uniprot-mouseProtein annotation based on UniProt11.5 K2023-11-28Developing
test_disfluency_annotation_auto_jp02023-12-28Testing
DisGeNet-2017-sample2.93 K2023-11-29Testing
Automatic annotators
NameDescription
31-39 / 39 show all
PD-NCBIGene
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
Glycan-Motif-Image
PD-MAT
PD-CLO
PD-GlycoEpitope
PD-NCBITaxon
PD-UBERON-AE-2023It annotates for anatomical entities, based on the UBERON-AE-2023 dictionary on PubDictionaries. Threshold is set to 0.85.
Glycan-Image
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.