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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameT Description# Ann.Updated atStatus
141-150 / 160 show all
LitCovid-PD-HP922 K2023-11-28Beta
LitCoin-GeneOrGeneProduct-v0https://pubdictionaries.org/text_annotation.json?dictionary=NCBIGene-NER&threshold=0.85&abbreviation=true15.8 K2023-11-29
GlyCosmos600-MAT8632023-11-29Testing
MENA-example52023-11-29
GlycoConjugate-collectionThe PubMed entries (titles and abstracts) from the journal of GlycoConjugate02023-11-28Developing
GlyCosmos600-docsA random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.02023-11-29Released
GlyCosmos600-GlycanStructure972023-11-29Testing
DisGeNet-2017-sample2.93 K2023-11-29Testing
test_disfluency_annotation_auto_jp02023-12-28Testing
pubmed-2016abstracts published in 201602023-11-28
Automatic annotators
NameDescription
31-39 / 39 show all
PD-NCBIGene
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
Glycan-Motif-Image
PD-MAT
PD-CLO
PD-GlycoEpitope
PD-NCBITaxon
PD-UBERON-AE-2023It annotates for anatomical entities, based on the UBERON-AE-2023 dictionary on PubDictionaries. Threshold is set to 0.85.
Glycan-Image
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.