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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-09-19
Projects
NameTDescription# Ann.Updated atStatus
11-20 / 163 show all
EDAM-DFOannotation for EDAM terms for data, formats, and operations12.5 K2023-11-29Testing
LitCovid-sample-PD-HP2112023-11-29Testing
GlycoBiology-GOGO-based annotation to GlycoBiology abstracts02023-11-29Testing
DocumentLevelAnnotationSampleA sample project for document level annotation472023-11-29Testing
semrep-sampleSample annotation of SemRep, produced by Rindflesch, et al. Rindflesch, T.C. and Fiszman, M. (2003). The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. Journal of Biomedical Informatics, 36(6):462-477.11.1 K2023-11-29Testing
example-dialog02023-11-27Testing
LitCovid-PD-HP922 K2023-11-28Beta
LitCoin-GeneOrGeneProduct-v0https://pubdictionaries.org/text_annotation.json?dictionary=NCBIGene-NER&threshold=0.85&abbreviation=true15.8 K2023-11-29
GlyCosmos600-MAT8632023-11-29Testing
MENA-example52023-11-29
Automatic annotators
NameDescription
21-30 / 38 show all
PubTatorPubTator annotation provided by NCBI
PD-CHEBI-B
PD-GlycoGenes20190927-B
PD-GO-BP-BBiological Processes as defined in GO
PD-CLO-B
PD-HP-PA-B
PD-HP-PA
PD-NCBIGene
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
Glycan-Motif-Image
Editors
Name Description
1-1 / 1
TextAEThe official stable version of TextAE.