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Jin-Dong Kim
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Name DescriptionUpdated at
11-12 / 12 show all
CORD-19CORD-19 (COVID-19 Open Research Dataset) is a free, open resource for the global research community provided by the Allen Institute for AI: https://pages.semanticscholar.org/coronavirus-research. As of 2020-03-20, it contains over 29,000 full text articles. This CORD-19 collection at PubAnnotation is prepared for the purpose of collecting annotations to the texts, so that they can be easily accessed and utilized. If you want to contribute with your annotation, take the documents in the CORD-19_All_docs project, produce your annotation to the texts using your annotation system, and contribute the annotation back to PubAnnotation (HowTo). All the contributed annotations will become publicly available. Please note that, during uploading your annotation data, you do not need to be worried about slight changes in the text: PubAnnotation will automatically catch them and adjust the positions appropriately. Once you have uploaded your annotation, please notify it to admin@pubannotation.org admin@pubannotation.org, so that it can be included in this collection, which will make your annotation much easily findable. Note that as the CORD-19 dataset grows, the documents in this collection also will be updated. IMPORTANT: CORD-19 License agreement requires that the dataset must be used for text and data mining only.2020-04-14
bionlp-st-ge-2016The 2016 edition of the Genia event extraction (GE) task organized within BioNLP-ST 20162019-03-11
Projects
NameTDescription# Ann.Updated at Status
41-50 / 160 show all
pubtator-sampleSample annotation of PubTator produced by Zhiyong Lu et al.282023-11-27Testing
CHEMDNER-training-testThe training subset of the CHEMDNER corpus29.4 K2023-11-27Testing
CORD-19-sample-HP392023-11-27Developing
CORD-19-sample-sentences1612023-11-27Developing
LitCovid-sample-PD-MONDO1.21 K2023-11-27Developing
GlycoConjugate-collectionThe PubMed entries (titles and abstracts) from the journal of GlycoConjugate02023-11-28Developing
Parkinson542023-11-28Testing
LitCovid-PD-HP922 K2023-11-28Beta
LitCovid-sample-PD-IDO1.27 K2023-11-28Beta
BioASQ-samplecollection of PubMed articles which appear in the BioASQ sample data set.02023-11-28Testing
Automatic annotators
NameDescription
21-30 / 39 show all
PD-NCBITaxon-B
PubTatorPubTator annotation provided by NCBI
PD-CHEBI-B
PD-GlycoGenes20190927-B
PD-GO-BP-BBiological Processes as defined in GO
PD-HP-B
PD-HP
PD-CLO-B
PD-HP-PA-B
PD-HP-PA
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.