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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-15 / 15 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-12-19
Lectin-Jamboree2025-01-16
Oryza_collection_BLAH92025-01-16
IU_X-Ray2025-09-16
Projects
NameTDescription# Ann.Updated atStatus
161-170 / 183 show all
GlyCosmos15-MONDOAnatomy annotation, obtained via the following API: https://pubdictionaries.org/text_annotation.json?dictionary=MONDO&threshold=0.93&longest=true Dictionary: MONDO Threshold: 0.93 20.3 K2025-06-07Developing
Anatomy-UBERONAnatomical structures based on UBERON.2.12 M2024-09-19Developing
GlyCosmos15-Lectin-Jamboree1.33 K2024-12-05Testing
Anatomy-MATAnatomical structures based on Minimal Anatomical Terminology (MAT).778 K2024-09-19Developing
Lectin-carbogrove342025-04-21Testing
GlyCosmos15-GlycoEpitopeGlycoepitope annotation, obtained via the following API: https://pubdictionaries.org/text_annotation.json?dictionary=GlycoEpitope&abbreviation=true&longest=true Dictionary: GlycoEpitope Threshold: 0.94 (default) 28.5 K2025-06-07Developing
testtesttest02025-11-09Developing
Lectin-Jamboree-Sentence02024-12-05
GlyCosmos15-MATAnatomy annotation, obtained via the following API: https://pubdictionaries.org/text_annotation.json?dictionary=MAT&abbreviation=true&longest=true Dictionary: FMA Threshold: 0.85 (default) 15.1 K2025-06-07Developing
CHEMDNER-training-testThe training subset of the CHEMDNER corpus29.4 K2025-11-02Testing
Automatic annotators
NameDescription
11-20 / 41 show all
PD-GlycoGenes-B
PD-GlycoProteins-B
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
PD-Preeclampsia-B
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
EnjuParserEnju HPSG Parser developed by University of Tokyo.
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
PD-NCBITaxon-B
PubTatorPubTator annotation provided by NCBI
PD-CHEBI-B
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.