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Jin-Dong Kim
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Projects
NameTDescription# Ann. Updated atStatus
151-160 / 160 show all
GlyCosmos-GlycanStructure-c02023-11-29Testing
BioASQ-samplecollection of PubMed articles which appear in the BioASQ sample data set.02023-11-28Testing
PubMed-2000abstracts published in 2000.02023-11-29Developing
pubmed-2016abstracts published in 201602023-11-28
test_disfluency_annotation_auto_jp02023-12-28Testing
LitCovid-GlycoBiologyArticles from GlycoBiology, received by the keyword "Covid-19"02023-11-29Testing
GlyCosmos600-docsA random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.02023-11-29Released
GlycoConjugate-collectionThe PubMed entries (titles and abstracts) from the journal of GlycoConjugate02023-11-28Developing
PubMed-German-testA collection of PubMed abstracts which are written in German02023-11-24Developing
PubMed-2017abstracts published in 2017.02023-11-24Developing
Automatic annotators
NameDescription
11-20 / 39 show all
PD-FMA-PAEPhysical Anatomical Entities from FMA
PD-UBERON-AE-BIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.
PD-GlycanStructures-B
PD-GlycoGenes-B
PD-GlycoProteins-B
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
PD-Preeclampsia-B
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
EnjuParserEnju HPSG Parser developed by University of Tokyo.
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
Editors
Name Description
1-2 / 2
TextAETextAE version 5, which enables edition of attributes of denotations.
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.