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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann.Updated atStatus
11-20 / 159 show all
EDAM-DFOannotation for EDAM terms for data, formats, and operations12.5 K2023-11-29Testing
LitCovid-sample-PD-HP2112023-11-29Testing
GlycoBiology-GOGO-based annotation to GlycoBiology abstracts02023-11-29Testing
DocumentLevelAnnotationSampleA sample project for document level annotation472023-11-29Testing
semrep-sampleSample annotation of SemRep, produced by Rindflesch, et al. Rindflesch, T.C. and Fiszman, M. (2003). The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. Journal of Biomedical Informatics, 36(6):462-477.11.1 K2023-11-29Testing
GlyCosmos6-HP02023-11-28
example-dialog02023-11-27Testing
LitCovid-PD-HP922 K2023-11-28Beta
LitCoin-GeneOrGeneProduct-v0https://pubdictionaries.org/text_annotation.json?dictionary=NCBIGene-NER&threshold=0.85&abbreviation=true15.8 K2023-11-29
GlyCosmos600-MAT8632023-11-29Testing
Automatic annotators
NameDescription
11-20 / 38 show all
PD-FMA-PAEPhysical Anatomical Entities from FMA
PD-UBERON-AE-BIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.
PD-GlycanStructures-B
PD-GlycoGenes-B
PD-GlycoProteins-B
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
PD-Preeclampsia-B
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
EnjuParserEnju HPSG Parser developed by University of Tokyo.
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.