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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann. Updated atStatus
1-10 / 159 show all
PubMed-2000abstracts published in 2000.02023-11-29Developing
test_disfluency_annotation_auto_jp02023-12-28Testing
GlyCosmos600-docsA random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.02023-11-29Released
pubmed-2016abstracts published in 201602023-11-28
example-dialog02023-11-27Testing
GlyCosmos6-HP02023-11-28
BioASQ-samplecollection of PubMed articles which appear in the BioASQ sample data set.02023-11-28Testing
GlycoConjugate-collectionThe PubMed entries (titles and abstracts) from the journal of GlycoConjugate02023-11-28Developing
GlycoBiology-GOGO-based annotation to GlycoBiology abstracts02023-11-29Testing
GlyCosmos-GlycanStructure-c02023-11-29Testing
Automatic annotators
NameDescription
11-20 / 38 show all
PD-FMA-PAEPhysical Anatomical Entities from FMA
PD-UBERON-AE-BIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.
PD-GlycanStructures-B
PD-GlycoGenes-B
PD-GlycoProteins-B
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
PD-Preeclampsia-B
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
EnjuParserEnju HPSG Parser developed by University of Tokyo.
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.