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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann.Updated atStatus
21-30 / 161 show all
LitCovid-sentences-v1Sentence segmentation of all the texts in the LitCovid literature. The segmentation is automatically obtained using the TextSentencer annotation service developed and maintained by DBCLS.16.5 K2023-11-27Released
LitCovid-PAS-EnjuPredicate-argument structure annotation produced by the Enju parser.125 K2023-11-28Beta
LitCovid-sample-PD-FMA1.93 K2023-11-28Beta
LitCovid-sample-PD-GO-BP-07082023-11-29Beta
LitCovid-sample-sentences2.3 K2023-11-29Beta
LitCovid-sample-PD-NCBITaxon1.35 K2023-11-29Beta
DisGeNETDisease-Gene association annotation.3.12 M2023-11-24Beta
LitCovid-PubTator5.88 M2023-11-24Beta
LitCovid-PD-HP922 K2023-11-28Beta
LitCovid-sample-PD-IDO1.27 K2023-11-28Beta
Automatic annotators
NameDescription
11-20 / 40 show all
PD-UBERON-AE-BIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents.
PD-GlycanStructures-B
PD-GlycoGenes-B
PD-GlycoProteins-B
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
PD-Preeclampsia-B
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
EnjuParserEnju HPSG Parser developed by University of Tokyo.
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
PD-NCBITaxon-B
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.